Gene Apre_0056 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApre_0056 
Symbol 
ID8396803 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnaerococcus prevotii DSM 20548 
KingdomBacteria 
Replicon accessionNC_013171 
Strand
Start bp67766 
End bp68443 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content37% 
IMG OID644994393 
ProductRhomboid family protein 
Protein accessionYP_003151832 
Protein GI257065576 
COG category[R] General function prediction only 
COG ID[COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones42 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATATTA AAAAATTAGG AGAAACAAAA GTGACTACTG TCCTTATGAT AATCAATATA 
GCAGTTTTCG CTATAATGAC TTTGACAGGA GGAAGCGAGA GTATTGAAAA TATCGTAAGA
TTTGGAGCAA TGGTCAAGCC CTTGTTTTAT CAAGGCGAAT GGTGGAGAGC CCTTACGGCA
GCCTTTATTC ATATCGGATT TTTCCATATT TTGTTTAATA TGTACTTCCT TTATAATATA
GGACCTCTTT TTGAGAGACT TTATGGATCT ATTAACTTTC TAATAATCTA CATCCTGGCT
GGAGTTTTGG GCAATCTCTT TACCTACGCT TTCGGCGGGG CTAATACTGT CTCTGCCGGA
GCTTCCACTT CCCTATATGG GATGTTTGGA CTTGCTATTG GTCTTATGAT TAACTACAAG
GATGACGAGA TATTAAGAGG ACTTGGAGCG AGTTTTATTT CTATAATAGT TATAAATATA
GTCTATTCCT TGCTTGCTCC TGGAATTGGA ATTCAAGGAC ACATGGGAGG ATTTTTGGCA
GGTGTTCTTC TAGCGGGAAT TTTCCCTGTT GTAAATAGAC AGCTTCCAAA GACTACTATC
ATAGTTTCTG TATTAGCCTT CATAATCTTG GCTTTCTTGT TTATAAGAAT TGGTAATAAG
AGTCTGGGTG TTGGCTAA
 
Protein sequence
MNIKKLGETK VTTVLMIINI AVFAIMTLTG GSESIENIVR FGAMVKPLFY QGEWWRALTA 
AFIHIGFFHI LFNMYFLYNI GPLFERLYGS INFLIIYILA GVLGNLFTYA FGGANTVSAG
ASTSLYGMFG LAIGLMINYK DDEILRGLGA SFISIIVINI VYSLLAPGIG IQGHMGGFLA
GVLLAGIFPV VNRQLPKTTI IVSVLAFIIL AFLFIRIGNK SLGVG