| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccur_10940 |
|---|
| Symbol | |
|---|
| ID | 8375301 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptobacterium curtum DSM 15641 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013170 |
|---|
| Strand | - |
|---|
| Start bp | 1242492 |
|---|
| End bp | 1244111 |
|---|
| Gene Length | 1620 bp |
|---|
| Protein Length | 539 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644994016 |
|---|
| Product | trypsin-like serine protease with C-terminal PDZ domain protein |
|---|
| Protein accession | YP_003151467 |
|---|
| Protein GI | 256827508 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000345024 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 153 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAGA ATGGAATTCC TCCCGTAGGA CCGACGGGCT CTTCATATAC GGGATATACC
GGACAGCCGG GTGCGCCGAT TCCACCGCAG TCGACTCAAC CGATGACTTC AGCGACACAA
ACGGCACAAA CAATGCAGGC AGCACAATCG GCTACAACAG CGCAGCCAAC CCAGGCGACA
CAGGCAACTT CGTATGCAAC CGTGCCGCCT CAATTTACCT CCGTTCCTCC GCAACCTCCA
ACCGTTCCAC CAGCGGGCAC AACAACTGCT ATACCAGCAG CTCATGTGCC CCAGACCGGT
GTTTCAGGTA AGCGTGTCTT TGGTATTGCG TTTATCGGTG CACTTGCTGC GTGTGCGGTT
GCTGCCGCGT GTTTTCTTGG CTATCAGTCG ATTACGGGGC ATTCGGCTTC CCAGGTGGTA
CTGGGGTCTT CCAGTGACAG CACCATTACC GCAAGCGACG ACGAGACTGA TCGTGCTGAA
AAGGTAGCTG ACAAGACGCT TCCATCGGTT ACAGCTATTA ATGTGTACAC CGACCAATCG
GGGTGGGGCA GCATGTTGGG TCGTTCAACC GATCAGTCGA GTTTGGTTAA GACAAGCCTG
GGCAGCGGCG TGATTATTTC TTCCGATGGC TACATTCTGA CAAATAACCA TGTGGTTGAA
TCAGCTGATG CATTAAAGGT AACGGCCAAT GGGCAAGAAT ATGATGCCAA GGTTGTGGGT
ACTGACCCAA CTACTGACCT GGCAGTCATT AAGATTGATG CAACGGGTTT GACCCCCATC
GAGATCGGCA AATCGTCCGA TTTGAAGGCT GGTCAGTGGG TCATGACCGT TGGCAGCCCC
TTTGGTCTTG AACAGTCAGT GGCGACGGGT ATTATTTCGG CAACAAGTCG TACCGTGGCC
GTGTCGTCAA GTAGCGATGA AGGGTCGGGT AATGGCTATA ACAATAGCTA CTCTTCGGCT
GCTGCACCTA CGATTTACAC GAACATGATT CAGACCGATG CAGCTATCAA CCCGGGCAAT
TCCGGTGGTG CGCTTGTTGA TGCAAATGGT AAGCTCATTG GCATCAATGC GGTTATCGAA
TCGTATTCAG GTAACTATTC AGGTGTTGGA TTTGCCATCC CTGTTGACTA CGCCATGGAT
ATCGCGCAGC AGATTATTTC TGGTAAAACG CCAACGCATG CCATGATTGG GGTAACGCCG
ATTTCAATTA CGAGCCAGCT CAATCAGCGC TACCACTTGG GTACTGATTC AGGTGCGTAT
GTATCGAGCA TTGTTGAAGG TAGTGGCGCT GCGCAGGCTG GCCTTGAAGA GGGCGATATC
ATCACGAAGG TTGATGATAC GGCGGTAACA GACGCAACAG GATTGATCGC GGCTGTGCGT
TCGAAGAATG TCGGCGACAC AGTAACGGTT ACCTATCTGC GCGATGGTCA GCAGATGACC
GCTCAAGTGA CCCTTGGATC AGACGACAAT GCCAATTCGC TGTTGCGCAA GAATAGTAGC
AGCCGGGGCG GCTTATTTGG TATGAGCTAT GACAACCAGG GAAGCGGCAA CAACCAAGGC
TCAACGGCAA CTGGTTCAAC AGGATCGAGT CAGTCTTCTC CTCAAAGGGC AGCTGCTTAG
|
|---|
| Protein sequence | MTENGIPPVG PTGSSYTGYT GQPGAPIPPQ STQPMTSATQ TAQTMQAAQS ATTAQPTQAT
QATSYATVPP QFTSVPPQPP TVPPAGTTTA IPAAHVPQTG VSGKRVFGIA FIGALAACAV
AAACFLGYQS ITGHSASQVV LGSSSDSTIT ASDDETDRAE KVADKTLPSV TAINVYTDQS
GWGSMLGRST DQSSLVKTSL GSGVIISSDG YILTNNHVVE SADALKVTAN GQEYDAKVVG
TDPTTDLAVI KIDATGLTPI EIGKSSDLKA GQWVMTVGSP FGLEQSVATG IISATSRTVA
VSSSSDEGSG NGYNNSYSSA AAPTIYTNMI QTDAAINPGN SGGALVDANG KLIGINAVIE
SYSGNYSGVG FAIPVDYAMD IAQQIISGKT PTHAMIGVTP ISITSQLNQR YHLGTDSGAY
VSSIVEGSGA AQAGLEEGDI ITKVDDTAVT DATGLIAAVR SKNVGDTVTV TYLRDGQQMT
AQVTLGSDDN ANSLLRKNSS SRGGLFGMSY DNQGSGNNQG STATGSTGSS QSSPQRAAA
|
|---|
| |