| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccur_03810 |
|---|
| Symbol | |
|---|
| ID | 8374589 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptobacterium curtum DSM 15641 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013170 |
|---|
| Strand | + |
|---|
| Start bp | 439845 |
|---|
| End bp | 443381 |
|---|
| Gene Length | 3537 bp |
|---|
| Protein Length | 1178 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644993305 |
|---|
| Product | DNA-directed RNA polymerase subunit beta |
|---|
| Protein accession | YP_003150787 |
|---|
| Protein GI | 256826828 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02013] DNA-directed RNA polymerase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000134486 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 95 |
|---|
| Fosmid unclonability p-value | 0.250195 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCGCAAG CACAAAACAA CGCTCCCAAC AGCCTTTATA GGAGCCGCAG AAGCTTCGCA
AAGATCCCAC CCGTTATCGA TATCCCCAAC CTGATTGCCA TTCAGACTGA AAGCTTTGAC
TGGTTCAAGG GTGAGGGCCT CGACCAAGCA TTCCAAGATA TTTGCCCCAT CGAGAGCAAT
ACGAAGAATA TGCGCGTCGA GATCGGTAAG CACGAGTTCG GTGATCCGAA GTATCCGGTT
GACGAATGCA AGGTCAAAGA TCTGACCTAT CAGGCACCCC TGTTTGCCGA AGTGCGCTTC
ACCAATTTGG AGACCGGCGA AATCAAAGAG CAGGACGTCT TTATGGGCGA TTTCCCGCTG
ATGACGCCGC GCGGTACCTT TATTGTTAAC GGTACCGAAC GAGTGGTTGT CTCGCAGTTG
GTGCGCAGCC CTGGTGTCTA TTTTGGGGCC GAGCGCGACA AGACAAGCAA CAAGACCATC
TATAACGCCA AGGTTATTCC TTCGCGGGGT GCTTGGCTTG AATTTGAAAC CGACAAGCGC
GATATCCTTT CGGTGCGTAT CGACCGCAAG CGCAAGCAGC CGGCAACTCT TTTGCTGCGC
GCTCTAGGGC TTGCTGAAAC ACGCGAAGAG ATTATTGAAG CGCTCGGCGA TAGCGAAATG
GTGCTGCGCA CGATCGATCG CGATCCTGCG ACAACACGCG ACGAATCGTT GATCGAGCTC
TACAAGCGCT TCCGTCCGGG TGAGCCGCCT ACCATCGATT CGGCACGTAC ATTGCTTGAT
GGATTGTTCT TCAATCCACA GCGCTACAAC CTTGCAAAGG TTGGTCGGTA TAAGATCAAC
AAAAAGCTCG GTTTCGACGC CGAAGGCGAT TCCTCCACGC TAACCAATGA CGATATCATT
GCCACAATGC GCTACATTGT GGCTTTGCAT AACGGTGAAG AAGGCTATGT CACCGATGAT
ATCGACCATT TTGGCAACCG CCGTATTCGT ACGGTGGGTG AATTAATCCA GAACCAGTTC
CGCATTGGCT TGTCGCGTAT GGAGCGTGTG GTACGCGAGC GCATGAGCAT GCAGGAGCCC
GACGAAATTA CGCCGCAGAG CTTGATTAAC ATTAGGCCTA TTGTGGCTTC CATCAAGGAA
TTCTTCGGAT CGTCTCAGCT GTCGCAGTTC ATGGACCAGG CCAACCCTGT GGCGGGCGTT
ACGCATAAGC GTCGTCTGTC AGCATTGGGT CCGGGTGGTC TGTCGCGTGA GCGTGCAGGC
TTTGAAGTGC GTGACGTTCA CAATTCGCAC TACAGCCGCA TGTGTCCTAT CGAAACACCC
GAAGGTCCTA ACATCGGCTT AATTGGTTCG CTTGCCACGT ATGCCCGCGT GAACAATTAC
GGCTTTATCG AAGCGCCGTA TCGTCGCGTG GTTGAGGGTA AGGTAACGAA CGACGTTGAT
TACCTTACCG CCGATGAAGA AGAGCATCAT ACTATTGCTC AGGCTAACGA GCCATACGAT
ACCAAGACGG GTATCCTGGG AACGACCGAC GAATCTGGGA CCTTCCACCC AACTGAACGT
TTGCTGGCTC GTACGCGCAA CTCGCATGGT GAGTTTGGCG ACCCGGCTGA GGTGTCAGTT
TCTCAGGTGG ACTACATGGA CATCTCGCCG CGCCAGATGG TGTCGGTGGC CACTTCGCTT
ATTCCGTTCC TCGAACACGA CGACGCTCAT CGCGCCCTCA TGGGTTCGAA CATGCAGCGT
CAGGCTGTGC CGCTTCTGCG CCCGCACGCA CCGTTTGTTG GTACGGGCAT CGAGCACCGT
ATTGCAGTTG ACTCGGGTGA GATTCTTATT GCACAGAACT CTGGTCTGGT CGACTATGTT
GATGGTGAGG TTATCAATAT CCTCACCGAC GATGGTGAAT ACGACGAATA CTTGATTCCG
AAGTTCCAGC GCTCCAACCA GGGCTATTGC GTAAATCATA AACCGCTCGT GCGCAAGGGC
GACCGAGTGG AAGTGGGCGA TGTACTTGCC GATGGTCAGT CGTGTGACCA CGCTGAGCTG
TCGCTGGGGC AGAACCTGCT GGTGGCTTAC ATGCCATGGG AAGGTTACAA CTACGAGGAC
GCTATCGTTA TTTCCGAGCG TGTTGTTGCT GAAGACTTGC TGACAAGCAT TCACATTAGC
GAATACGAAG CTGATGCGCG CGACACAAAG CTGGGGCCTG AAGAGATTAC TCGTGAGATT
CCTAACATCA GCGAAGATAT GATTGCCGAC TTAGATGGCG ATGGCATTAT TCGTATTGGT
GCTGAAGTCA ATCCGGGCGA TGTGCTGGTG GGTAAGGTAA CCCCGAAGGG TGAAACTGAA
CTAACAGCCG AAGAACGCCT ACTGCGTGCT ATCTTTGGCG AAAAGGCACG TGAAGTGCGT
GACACAAGCC TTAAGGTGCC TCATGGTGCC GGCGGTCGTG TAATTGGCAT TCACCGCTTC
AGCCGCGCTT CGGGCGATGA ATTGGCGCCT GGCGTCAACG AGCAGGTGCG CGTATATGTG
GCGCAGAAGC GCAAAATCCA GCAGGGCGAC AAGATGTCTG GTCGTCATGG TAACAAAGGT
GTTGTCTCGC GGGTACTGCC GGTTGAAGAC ATGCCATATT TGGCCGATGG CACACCGGTT
GACATTATGC TGAACCCATT GGGCGTACCT TCTCGTATGA ACGTTGGTCA GCTTCTTGAA
TGCCATCTTG GGTGGGCAGC TAAATGGGGC TGGTCGGATG ACGAAAATTC CGACGAGGCT
GTTGAAGGTC CCATCTATGT GTCGACTCCG GTGTTCGATA GCGCCACTGA AGAAGAAATT
CGCGACGTTA TCGAAAAGTC GAACCGCAAT CTCGTTAACC TGAACCGTGA AAAGTACGGC
GATGCAATGC GTGAAGAATT TGTCCCGCAG CTTAACGAAT TTGGCAAGAC CACGTTGTAT
GACGGTCGCA CGGGCGAACC GTTCCGCGAG CCGATTACGG TAGGCTATCC CTATATGCTT
AAGCTCGGCC ACATGGTTGA CGACAAGATT CATGCTCGCT CAACTGGTCC TTACAGCTTA
ATCACACAGC AACCGCTGGG CGGCAAGGCT CAGTTTGGTG GCCAGCGCTT CGGCGAAATG
GAAGTGTGGG CGCTCTATGC CTACGGCGCA TCGAACGTGT TGCAGGAAAT CCTGACGGTG
AAGTCTGACG ACACGGTTGG TCGCGTGAAG ACATACGAGG CCATCGTGAA GGGCGAGAAC
ATGCCCGATG CGGAAGTTCC CGAATCGTTC AAGGTGCTCA TTAAGGAAAT GCGTTCCCTG
TGCTTGAATG TGGAGCTCGA AGGTCACAAT AGGGAAGTGC TCGATGTGAT TGAAAGCCAT
CCTGAACGGA CGAACGACGA CAATGTTCTT GCTGGTCTGG TTGAGGATGC ACAGAAGACT
GAACGCGAAG ATGACGACAT GATCGGCGAC ATTGCTGCCG AGCTGTCGAA TCTCATCAGC
GATGATTTGA AGGACGGCAA TGACGGAAAC GATCTCATCG GCGGAGAGGA GCGCTAA
|
|---|
| Protein sequence | MAQAQNNAPN SLYRSRRSFA KIPPVIDIPN LIAIQTESFD WFKGEGLDQA FQDICPIESN
TKNMRVEIGK HEFGDPKYPV DECKVKDLTY QAPLFAEVRF TNLETGEIKE QDVFMGDFPL
MTPRGTFIVN GTERVVVSQL VRSPGVYFGA ERDKTSNKTI YNAKVIPSRG AWLEFETDKR
DILSVRIDRK RKQPATLLLR ALGLAETREE IIEALGDSEM VLRTIDRDPA TTRDESLIEL
YKRFRPGEPP TIDSARTLLD GLFFNPQRYN LAKVGRYKIN KKLGFDAEGD SSTLTNDDII
ATMRYIVALH NGEEGYVTDD IDHFGNRRIR TVGELIQNQF RIGLSRMERV VRERMSMQEP
DEITPQSLIN IRPIVASIKE FFGSSQLSQF MDQANPVAGV THKRRLSALG PGGLSRERAG
FEVRDVHNSH YSRMCPIETP EGPNIGLIGS LATYARVNNY GFIEAPYRRV VEGKVTNDVD
YLTADEEEHH TIAQANEPYD TKTGILGTTD ESGTFHPTER LLARTRNSHG EFGDPAEVSV
SQVDYMDISP RQMVSVATSL IPFLEHDDAH RALMGSNMQR QAVPLLRPHA PFVGTGIEHR
IAVDSGEILI AQNSGLVDYV DGEVINILTD DGEYDEYLIP KFQRSNQGYC VNHKPLVRKG
DRVEVGDVLA DGQSCDHAEL SLGQNLLVAY MPWEGYNYED AIVISERVVA EDLLTSIHIS
EYEADARDTK LGPEEITREI PNISEDMIAD LDGDGIIRIG AEVNPGDVLV GKVTPKGETE
LTAEERLLRA IFGEKAREVR DTSLKVPHGA GGRVIGIHRF SRASGDELAP GVNEQVRVYV
AQKRKIQQGD KMSGRHGNKG VVSRVLPVED MPYLADGTPV DIMLNPLGVP SRMNVGQLLE
CHLGWAAKWG WSDDENSDEA VEGPIYVSTP VFDSATEEEI RDVIEKSNRN LVNLNREKYG
DAMREEFVPQ LNEFGKTTLY DGRTGEPFRE PITVGYPYML KLGHMVDDKI HARSTGPYSL
ITQQPLGGKA QFGGQRFGEM EVWALYAYGA SNVLQEILTV KSDDTVGRVK TYEAIVKGEN
MPDAEVPESF KVLIKEMRSL CLNVELEGHN REVLDVIESH PERTNDDNVL AGLVEDAQKT
EREDDDMIGD IAAELSNLIS DDLKDGNDGN DLIGGEER
|
|---|
| |