Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ksed_19490 |
Symbol | |
ID | 8373454 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Kytococcus sedentarius DSM 20547 |
Kingdom | Bacteria |
Replicon accession | NC_013169 |
Strand | - |
Start bp | 2028007 |
End bp | 2030055 |
Gene Length | 2049 bp |
Protein Length | 682 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644992204 |
Product | uncharacterized vancomycin resistance protein |
Protein accession | YP_003149714 |
Protein GI | 256825754 |
COG category | [V] Defense mechanisms |
COG ID | [COG2720] Uncharacterized vancomycin resistance protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.0459635 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.00355972 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | GTGAGTTCCT CCCCCCGGCA GGCCGGGAGC AGCTGGCAGA GCCTCGTGGC GTCCCTCTTC CTGCTGATGG GCCTAGTGGC GTTGATCTAC CTGGCGCTGG TGTTCGTGGT CGGGCGCACC ACACCCTCGC ACCTGACCGT GGGCGGCGTC GACGTGAGCA GCATGGCCCC CGACGAGGCG GAGCGCTCCC TGGAGCAGGA GGCGGAGCGT CTGATGCAGC AGCCGGTCAC CGTCGTGGCC GCGGGCGAGG AGCACGAGTT CACCCCGCAG GAGCTCGGTC TGGGCTACGC CGTCGCCCGG AGCATGCGGG GTACGACGGG TCGTACCTGG GACCCGCGGG ACCTCTGGGC ACGGGCCACC GACCAAGTGG ACCGCGACTG GGCGGTCACC CTCGACGAGG GGCGCCTGCA CGACCGCCTG CGCGACCTCT CCGCGGAGAT CGACGTCCCG GCCACGCGCG CCACCATCGA GCTGCGCGGT GCCGAGGTCG AGGTGACCGA GGGGTCGACC GGTTCGGCGC TCGACGTCCG CGAGACCGGG GAGTCGGTGC AGGACGCTTG GCCACGCGAG CACCGGGTCG AGGGCACCGT CGAGGAGGTG GAGCCGGAGG TCACCGCCGC GGTGCTGCGG CGCTTCGCCG ACCAGGTCGT CGAGCCCGCC CTGTCCGCGC CCGTCACGCT CGTGGCCGTT CCCGTCGAGG GGCCGCGCCA GGGCCCGTCC GGCGAGTCGG CCGACCCGGC GTCGCCCGAG CCCTCCGACG GCTCGTCCGC CAGCGCCTCG GCACAGGACG AGCTGACCGC CACCCACCGG GTGACGATCC CGGCGGACCA GATCGCGGAG ATGGTCTCCA TCGGCGGCAC GGCCCGCGAA CCCGCCCTCG AGGTGGACGC CACCCGCTGG CGCGACGGGT TGCCGGACGA CCACCCCTTC TCCGACCGGG AGGCCCGGGA GGCGAGCCTG CGGCTGGAGG ACGGCAGCGT CCGCATCGAG CCTGCGCAGG TCGGGCGCTC GGTCTCCACG GGCGACATCG AGCAGGGCGT GCGCGACGCG GTGCGCGCCC AGGAGCGTGA GGCGCGGGTC ACCGTCAGCG TCACCCGGCC GTACGAGCTC GGGGACGGGT GGACCGCCCA GCACCTGTCC ACCTTCACCA CCATGCTCCC GGGCGGGGAG GGGAACGAGG GCCGCACCCG CAACATCCGC ACCCTCACCC GCAAGATCCA CGGCACGGTG GTGCCCGCCG GCGAGCAGTT CAGTCTGCTC GAGGTGATGG GGGAGCCCAC CAAGGAGGCC GGGTACGAGG AGGCCCACGT CATCAGCAAC GGCACGCTGT CCCATGCGGT CGGCGGCGGG CTGTCCCAGG TCTCCACGGC CGTGTACAAC ATGGCCTTCA TCGCCGGGGT ACAGCTGGAC GAGCACAAGC CGCACAGCTA CTACATCGCC CGCTACCCCG AGGGGCGTGA GGCGACGCTC TGGTACCCGG CCATCGACAA CGCGTGGACC AACGACACCG GCTCGCCCAT GATCATCAGC GCCCAGCTGG ACGGCCGGGA GCTCATCATG AGCCTCTACG GCGAGAAGCA GTACGACGTG GACGCCACCA CCCGGCCACG CCAGAACGTG GTGCCCTTCC GCAAGTACCA CAGCAACGAC CCCGAGTGCG TGGATCAGGG CGGGGTCGAC GGCTTCGACG TGACCGTGGA GCGGATCCTC ACCCCGTACG GGGACCACGA CGGCGAGGAG CGCACCGAGG TCATCGAGAC GCACTACGAC CCCAGCGACG AGGTGTTCTG CACCAACCCC GAGTCCCCGG AGTACTCGGG CTCGCAGGAG CCCCCGTCCG ACGAGTACCG CCCCTTCTCG CAGCGCGAGC AGGACGTGAA GGACGACGCC CGCGCCGAGG CCGAGCGCGA GCTGCGCGAG GACGAGCAGG CCGATGCGGA GGCGCAGGAG GAGGACGGCC GCCCCGAGGG GACGCCGAGC AGCTCGGCGG AGCCGGAGCC CAGCGGGTCC TCGACACCGC AGCCCAGCGG TTCGGCCTCG GGGGACTGA
|
Protein sequence | MSSSPRQAGS SWQSLVASLF LLMGLVALIY LALVFVVGRT TPSHLTVGGV DVSSMAPDEA ERSLEQEAER LMQQPVTVVA AGEEHEFTPQ ELGLGYAVAR SMRGTTGRTW DPRDLWARAT DQVDRDWAVT LDEGRLHDRL RDLSAEIDVP ATRATIELRG AEVEVTEGST GSALDVRETG ESVQDAWPRE HRVEGTVEEV EPEVTAAVLR RFADQVVEPA LSAPVTLVAV PVEGPRQGPS GESADPASPE PSDGSSASAS AQDELTATHR VTIPADQIAE MVSIGGTARE PALEVDATRW RDGLPDDHPF SDREAREASL RLEDGSVRIE PAQVGRSVST GDIEQGVRDA VRAQEREARV TVSVTRPYEL GDGWTAQHLS TFTTMLPGGE GNEGRTRNIR TLTRKIHGTV VPAGEQFSLL EVMGEPTKEA GYEEAHVISN GTLSHAVGGG LSQVSTAVYN MAFIAGVQLD EHKPHSYYIA RYPEGREATL WYPAIDNAWT NDTGSPMIIS AQLDGRELIM SLYGEKQYDV DATTRPRQNV VPFRKYHSND PECVDQGGVD GFDVTVERIL TPYGDHDGEE RTEVIETHYD PSDEVFCTNP ESPEYSGSQE PPSDEYRPFS QREQDVKDDA RAEAERELRE DEQADAEAQE EDGRPEGTPS SSAEPEPSGS STPQPSGSAS GD
|
| |