Gene Ksed_19490 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagKsed_19490 
Symbol 
ID8373454 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameKytococcus sedentarius DSM 20547 
KingdomBacteria 
Replicon accessionNC_013169 
Strand
Start bp2028007 
End bp2030055 
Gene Length2049 bp 
Protein Length682 aa 
Translation table11 
GC content72% 
IMG OID644992204 
Productuncharacterized vancomycin resistance protein 
Protein accessionYP_003149714 
Protein GI256825754 
COG category[V] Defense mechanisms 
COG ID[COG2720] Uncharacterized vancomycin resistance protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.0459635 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.00355972 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
GTGAGTTCCT CCCCCCGGCA GGCCGGGAGC AGCTGGCAGA GCCTCGTGGC GTCCCTCTTC 
CTGCTGATGG GCCTAGTGGC GTTGATCTAC CTGGCGCTGG TGTTCGTGGT CGGGCGCACC
ACACCCTCGC ACCTGACCGT GGGCGGCGTC GACGTGAGCA GCATGGCCCC CGACGAGGCG
GAGCGCTCCC TGGAGCAGGA GGCGGAGCGT CTGATGCAGC AGCCGGTCAC CGTCGTGGCC
GCGGGCGAGG AGCACGAGTT CACCCCGCAG GAGCTCGGTC TGGGCTACGC CGTCGCCCGG
AGCATGCGGG GTACGACGGG TCGTACCTGG GACCCGCGGG ACCTCTGGGC ACGGGCCACC
GACCAAGTGG ACCGCGACTG GGCGGTCACC CTCGACGAGG GGCGCCTGCA CGACCGCCTG
CGCGACCTCT CCGCGGAGAT CGACGTCCCG GCCACGCGCG CCACCATCGA GCTGCGCGGT
GCCGAGGTCG AGGTGACCGA GGGGTCGACC GGTTCGGCGC TCGACGTCCG CGAGACCGGG
GAGTCGGTGC AGGACGCTTG GCCACGCGAG CACCGGGTCG AGGGCACCGT CGAGGAGGTG
GAGCCGGAGG TCACCGCCGC GGTGCTGCGG CGCTTCGCCG ACCAGGTCGT CGAGCCCGCC
CTGTCCGCGC CCGTCACGCT CGTGGCCGTT CCCGTCGAGG GGCCGCGCCA GGGCCCGTCC
GGCGAGTCGG CCGACCCGGC GTCGCCCGAG CCCTCCGACG GCTCGTCCGC CAGCGCCTCG
GCACAGGACG AGCTGACCGC CACCCACCGG GTGACGATCC CGGCGGACCA GATCGCGGAG
ATGGTCTCCA TCGGCGGCAC GGCCCGCGAA CCCGCCCTCG AGGTGGACGC CACCCGCTGG
CGCGACGGGT TGCCGGACGA CCACCCCTTC TCCGACCGGG AGGCCCGGGA GGCGAGCCTG
CGGCTGGAGG ACGGCAGCGT CCGCATCGAG CCTGCGCAGG TCGGGCGCTC GGTCTCCACG
GGCGACATCG AGCAGGGCGT GCGCGACGCG GTGCGCGCCC AGGAGCGTGA GGCGCGGGTC
ACCGTCAGCG TCACCCGGCC GTACGAGCTC GGGGACGGGT GGACCGCCCA GCACCTGTCC
ACCTTCACCA CCATGCTCCC GGGCGGGGAG GGGAACGAGG GCCGCACCCG CAACATCCGC
ACCCTCACCC GCAAGATCCA CGGCACGGTG GTGCCCGCCG GCGAGCAGTT CAGTCTGCTC
GAGGTGATGG GGGAGCCCAC CAAGGAGGCC GGGTACGAGG AGGCCCACGT CATCAGCAAC
GGCACGCTGT CCCATGCGGT CGGCGGCGGG CTGTCCCAGG TCTCCACGGC CGTGTACAAC
ATGGCCTTCA TCGCCGGGGT ACAGCTGGAC GAGCACAAGC CGCACAGCTA CTACATCGCC
CGCTACCCCG AGGGGCGTGA GGCGACGCTC TGGTACCCGG CCATCGACAA CGCGTGGACC
AACGACACCG GCTCGCCCAT GATCATCAGC GCCCAGCTGG ACGGCCGGGA GCTCATCATG
AGCCTCTACG GCGAGAAGCA GTACGACGTG GACGCCACCA CCCGGCCACG CCAGAACGTG
GTGCCCTTCC GCAAGTACCA CAGCAACGAC CCCGAGTGCG TGGATCAGGG CGGGGTCGAC
GGCTTCGACG TGACCGTGGA GCGGATCCTC ACCCCGTACG GGGACCACGA CGGCGAGGAG
CGCACCGAGG TCATCGAGAC GCACTACGAC CCCAGCGACG AGGTGTTCTG CACCAACCCC
GAGTCCCCGG AGTACTCGGG CTCGCAGGAG CCCCCGTCCG ACGAGTACCG CCCCTTCTCG
CAGCGCGAGC AGGACGTGAA GGACGACGCC CGCGCCGAGG CCGAGCGCGA GCTGCGCGAG
GACGAGCAGG CCGATGCGGA GGCGCAGGAG GAGGACGGCC GCCCCGAGGG GACGCCGAGC
AGCTCGGCGG AGCCGGAGCC CAGCGGGTCC TCGACACCGC AGCCCAGCGG TTCGGCCTCG
GGGGACTGA
 
Protein sequence
MSSSPRQAGS SWQSLVASLF LLMGLVALIY LALVFVVGRT TPSHLTVGGV DVSSMAPDEA 
ERSLEQEAER LMQQPVTVVA AGEEHEFTPQ ELGLGYAVAR SMRGTTGRTW DPRDLWARAT
DQVDRDWAVT LDEGRLHDRL RDLSAEIDVP ATRATIELRG AEVEVTEGST GSALDVRETG
ESVQDAWPRE HRVEGTVEEV EPEVTAAVLR RFADQVVEPA LSAPVTLVAV PVEGPRQGPS
GESADPASPE PSDGSSASAS AQDELTATHR VTIPADQIAE MVSIGGTARE PALEVDATRW
RDGLPDDHPF SDREAREASL RLEDGSVRIE PAQVGRSVST GDIEQGVRDA VRAQEREARV
TVSVTRPYEL GDGWTAQHLS TFTTMLPGGE GNEGRTRNIR TLTRKIHGTV VPAGEQFSLL
EVMGEPTKEA GYEEAHVISN GTLSHAVGGG LSQVSTAVYN MAFIAGVQLD EHKPHSYYIA
RYPEGREATL WYPAIDNAWT NDTGSPMIIS AQLDGRELIM SLYGEKQYDV DATTRPRQNV
VPFRKYHSND PECVDQGGVD GFDVTVERIL TPYGDHDGEE RTEVIETHYD PSDEVFCTNP
ESPEYSGSQE PPSDEYRPFS QREQDVKDDA RAEAERELRE DEQADAEAQE EDGRPEGTPS
SSAEPEPSGS STPQPSGSAS GD