| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ksed_16690 |
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| Symbol | |
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| ID | 8373175 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Kytococcus sedentarius DSM 20547 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013169 |
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| Strand | - |
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| Start bp | 1724143 |
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| End bp | 1725927 |
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| Gene Length | 1785 bp |
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| Protein Length | 594 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644991937 |
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| Product | RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase sigma factor, sigma-70 family |
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| Protein accession | YP_003149449 |
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| Protein GI | 256825489 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.029353 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACTCCCC CCACCTCCGA GAAGTCCGCA GAGAACCCCA CCGTGAGCGA GCCTGTGACC
GCGGTGCTGG GAAAGCAGAT GTTGGACAAG CCGGGACTCA TCGAGTTCGT GGAGCGCGCC
GTCGACAACG GCAAGGTCGC CACCGACAAG GTCCAGGCGG CCATCGAGGG GGCCGACCTG
ACGCCCACCC AGGCACAGCG CCTGCTCAAG AACCTCCGCT CCCAGGGCGT CGAGGTGCAC
TTCGACCAGG AGACCGCGGC CCGGCTCGCC CAGGTGCAGC GGGGGGTGAA GCCGCGCGCG
ACGCGTTCGC GGACGGCCAA GTCCACGACC GCCAAGAGCA CGACGGCCAA GTCCGCGACC
GCCAAGTCGA CCACCAGCAA GGCCACCACC GCCAAGTCCA CGACGGCCAA GTCCACGACC
GCCAAGAGCG CGACGGCCAA GTCCACGACC GCCAAGTCGA CCACCAGCAA GGCCACCACC
AAGTCGACTC CGACCAAGGG CGCGGCCGCC AAGTCGACCC CGGCCAAGGG CACCGCCAGC
ACCACCCGCA AGGCCACGAA GGCCGCGAAG GGCACCGCGG CGAAGTCCAC CGCCAAGGGC
AAGGCCGCGA CCAAGACCAC GGCGAAGTCC GCGGCGGAGA CCAACGCCCG CAACGCCTCG
GCCGACGCGC CGGAGCTGGA CGAGATCGCG GCCGAGGACG AGGCCGAGGA GCGCGCCAAG
CTCGAGGGCA AGGACACCGT CGAGCTGGTG GCCGGCGAGA CCTCGCAGGT CGCCCCGCAG
AAGGCTGCGG AGGAGGAGGC GTCGGAGTCC CGCGGGTTCG TGCTGCGCGC GGACGACGAG
GACGACGCCC CGGCCCAGCA GGTCGTCACC GCCGGTGCCA CCGCCGACGC GGTGAAGGAC
TACCTGAAGC AGATCGGCAA GGTCGCGCTG CTGAACGCCG AGCAGGAGGT GGACCTCGCC
AAGCGGATCG AGGCCGGCCT GTTCGCCGAG CAGCGCCTGA ACTCCGGTGA CAAGATCGAC
GCCAAGCTCA AGCGAGAGCT GTGGTGGGTG GCCTCCGACG GCAAGAACGC CAAGAACCAC
CTGCTGGAGG CCAACCTCCG CCTGGTGGTC TCGCTGGCCA AGCGCTACAC CGGCCGCGGC
ATGCTCTTCC TGGACCTGAT CCAGGAGGGC AACCTGGGCC TGATCCGTGC GGTTGAGAAG
TTCGACTACA CCAAGGGCTA CAAGTTCTCC ACCTACGCGA CCTGGTGGAT CCGGCAGGCC
ATCACGCGCG CCATGGCCGA CCAGGCCCGC ACCATCCGCA TCCCGGTGCA CATGGTCGAG
GTCATCAACA AGCTGGCCCG CGTGCAGCGC CAGATGCTGC AGGACCTGGG CCGCGAGCCC
ACCCCGGAGG AGCTCGCCAA GGAGCTCGAC ATGACCCCCG AGAAGGTCGT CGAGGTCCAG
AAGTACGGGC GTGAGCCGAT CTCCCTGCAC ACCCCGCTGG GCGAGGACGG CGACTCCGAG
TTCGGTGACC TCATCGAGGA CTCCGAGGCG GTCGTCCCCT CCGATGCGGT GAGCTTCACC
CTGCTGCAGG AGCAGCTGCA CTCGGTGCTT GACACCCTCT CCGAGCGCGA GGCCGGTGTG
GTCTCCATGC GCTTCGGCCT GGCCGACGGC CAGCCCAAGA CGCTCGACGA GATCGGCCGC
GTCTACGGGG TGACCCGCGA GCGCATCCGC CAGATCGAGT CCAAGACGAT GTCGAAGCTG
CGCCACCCGA GCCGCTCGCA GGTGCTGCGG GACTACCTGG ACTGA
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| Protein sequence | MTPPTSEKSA ENPTVSEPVT AVLGKQMLDK PGLIEFVERA VDNGKVATDK VQAAIEGADL
TPTQAQRLLK NLRSQGVEVH FDQETAARLA QVQRGVKPRA TRSRTAKSTT AKSTTAKSAT
AKSTTSKATT AKSTTAKSTT AKSATAKSTT AKSTTSKATT KSTPTKGAAA KSTPAKGTAS
TTRKATKAAK GTAAKSTAKG KAATKTTAKS AAETNARNAS ADAPELDEIA AEDEAEERAK
LEGKDTVELV AGETSQVAPQ KAAEEEASES RGFVLRADDE DDAPAQQVVT AGATADAVKD
YLKQIGKVAL LNAEQEVDLA KRIEAGLFAE QRLNSGDKID AKLKRELWWV ASDGKNAKNH
LLEANLRLVV SLAKRYTGRG MLFLDLIQEG NLGLIRAVEK FDYTKGYKFS TYATWWIRQA
ITRAMADQAR TIRIPVHMVE VINKLARVQR QMLQDLGREP TPEELAKELD MTPEKVVEVQ
KYGREPISLH TPLGEDGDSE FGDLIEDSEA VVPSDAVSFT LLQEQLHSVL DTLSEREAGV
VSMRFGLADG QPKTLDEIGR VYGVTRERIR QIESKTMSKL RHPSRSQVLR DYLD
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