| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ksed_14750 |
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| Symbol | rumB |
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| ID | 8372983 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Kytococcus sedentarius DSM 20547 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013169 |
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| Strand | + |
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| Start bp | 1514221 |
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| End bp | 1515462 |
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| Gene Length | 1242 bp |
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| Protein Length | 413 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 644991747 |
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| Product | 23S rRNA methyluridine methyltransferase |
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| Protein accession | YP_003149265 |
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| Protein GI | 256825305 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR02085] 23S rRNA (uracil-5-)-methyltransferase RumB |
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Plasmid Coverage information |
| Num covering plasmid clones | 46 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.247567 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGGGG CCGATGCCGC AGCGGCACCC GGTGCGGTCT CCCACCCGCC GGTCCACTGC
CACCACTTCA GCGCCGGGCG CTGCGGCTCG TGCACCCTCA TGGGCACGCC CTACCGCGTG
CAGCTGCAGC GCAAGGACGC CGTCGTGCGC GATCTCCTCG CGGCGCAGGT TCCGGCCACG
GCGTGGGAGG CACCGCTGGC CTCGGTGCCC GAGGGCTTCC GGACCAAGGC CAAGTTCGTG
GTGAGCGGGA GCGCCGCGGC GCCCACCCTG GGCATCCTCG ACGAGGCCGG CCGGGGCGTG
GACCTGCGCG ACTGCGGCCT GCACGTACCC GAGCTCGCCG CCGTGGCCGA CCGGCTGGCG
CGCTTCGTCA CCCGGGCCGC CCTGCCGCCC TACGACCTCG CCCGGCGCCG CGGCGAGCTG
AAGCACCTGG TGCTCACCGC GGCCCCCTCC GGCGACCTGA TGCTGCGGTT CGTCCTGCGC
ACCGAGGGGC CGCTGCCCCG CATCCGCGAG CACCTCCCCG GGCTGCTGGC CGACCTGCCG
CAGCTGCGTG TGGTGAGCGC GAACCTGCAC CCCGAGCACA AGGCCACGCT CAGCGGGGAG
GTGGAGATCG CGCTCACCGA GCAGACCCTC CTGCCGCTGG AGCTGCCCGG GGTCACCCTG
TTCGCCGGCC CGGGGGCGTT CGTGCAGACC AACACCACGG TGGCCGCGGC GCTCTACCAG
CAGGCCACCG CCTGGCTGGT GGACGCCGGG GCCCGGCGGG TGGCCGACCT CTACTGCGGC
GTCGGGGGCT TCGCCCTGCA CGCGGCCGCG GCGGGCACCG AGGCCGTGGG GGTGGAGATC
GCTGCCGATG CGGTGCGCGG CGCCCGTGCG GGCGCGGCAG CCCTCACCCA GCGCCCCGGG
GGTGGGGCCG CGCGCTTTGT GGTGGCCGAC GCCTCGGACC CCGCCGCCGT GCTCGCTGCC
GCCGGCACGG ACCGCGACGC GATGGTGGTG AACCCGCCCC GGCGCGGACT GGGACCAGAC
CTGCCGGCGA TGCTGGACGC CCGCTCCCCC GCCGCCGACC CGGCCTCGGC GCTGCGCACC
CTGGTGTACT CCTCCTGCAA CCCGGCCACC CTGGCCACGG ACCTGGCGGG ACTGCCCCAC
TGGCAGGTGC GCTCGGCCCG GCTGTTCGAC ATGTTCCCGA ACACCGACCA CGCCGAGGTG
GTGGTGCTGC TGGAGCCGCG CACCGCCACA CTGGGGGGAT GA
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| Protein sequence | MSGADAAAAP GAVSHPPVHC HHFSAGRCGS CTLMGTPYRV QLQRKDAVVR DLLAAQVPAT
AWEAPLASVP EGFRTKAKFV VSGSAAAPTL GILDEAGRGV DLRDCGLHVP ELAAVADRLA
RFVTRAALPP YDLARRRGEL KHLVLTAAPS GDLMLRFVLR TEGPLPRIRE HLPGLLADLP
QLRVVSANLH PEHKATLSGE VEIALTEQTL LPLELPGVTL FAGPGAFVQT NTTVAAALYQ
QATAWLVDAG ARRVADLYCG VGGFALHAAA AGTEAVGVEI AADAVRGARA GAAALTQRPG
GGAARFVVAD ASDPAAVLAA AGTDRDAMVV NPPRRGLGPD LPAMLDARSP AADPASALRT
LVYSSCNPAT LATDLAGLPH WQVRSARLFD MFPNTDHAEV VVLLEPRTAT LGG
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