| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ksed_14030 |
|---|
| Symbol | |
|---|
| ID | 8372911 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Kytococcus sedentarius DSM 20547 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013169 |
|---|
| Strand | + |
|---|
| Start bp | 1448451 |
|---|
| End bp | 1451312 |
|---|
| Gene Length | 2862 bp |
|---|
| Protein Length | 953 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644991677 |
|---|
| Product | superfamily II RNA helicase |
|---|
| Protein accession | YP_003149195 |
|---|
| Protein GI | 256825235 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4581] Superfamily II RNA helicase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.00460424 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.326096 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAGTC CCTCCGACCG CTTCGCGGCC GCCAAGCGCC GTGCCCGCCA CCCGCACCTG
CAGGACTTCC TGATGGGGCA GCCGTTCCAG CTGGACGACT TCCAGGTCAC GGCCTGCGAG
GCGGTGGAGG ACGGCAAGGG CGCCCTGGTG GCTGCCCCGA CCGGTGCCGG CAAGACGGTG
GTGGGGGAGT TCGCCGTCCA CCTGGCCCTG GCCACCGGGC GCAAGTGCTT CTACACCACC
CCCATCAAGG CCCTGAGCAA CCAGAAGTAC CACGACCTGG CACAGGAGTA CGGCGAGGCC
AACGTGGGCC TGTTGACCGG CGACAGCTCC GTCAACGGCA ACGCGCCCGT GGTGGTGATG
ACCACCGAGG TGCTGCGCAA CATGCTCTAC TCCGACTCCT CCACGCTCGC GGGCCTGGGC
TTCGTGGTCA TGGACGAGGT GCACTACCTC GCCGACCGCA TGCGCGGCGT GGTGTGGGAG
GAGGTGATCC TGCACCTGCC GGACGACGTG CAGGTGATCA GCCTCTCGGC CACCGTGAGC
AACGCCGAGG AGTTCGGCGC CTGGCTCAAG CAGGTGCGTG GGGACACCGA GGTGGTCGTC
TCCGAGGTGC GCCCGGTGCC GCTGTGGCAG CACATGATGG TGGGCAACGA CCTGTACGAC
CTGTTCCCGG AGGGCGGTGT GGGCGCCCGG CGCGGCTCTG CCTCCGCGGT GAACCCCGAA
CTCATGGCCC GGCTGCGCAC CGCCCAGGCC GAGCGCACCG CCTGGCACCG GGAGGACTCC
GGGGGACCGG CCGGCCGGCG CGGACGGGGG CGGCGCGGCA GCGGCCGGGC TCGCGACGAC
CACCGCGATC ACGGAGGTCC CTCCCGCGGG GGCCCGCCCA CGCGTGGCAC CGGCACGCCC
TCGCGGACGC AGGTGGTGCA GGCCCTGCAC GCCGACGGGC TGCTGCCGGC CATCGTGTTC
ATCTTCTCCC GCATCGGCTG CGACTCCGCG GTGCGCCAGC TGCTGGCCTC CGGCACACGC
CTCATCAGCG ACGAGGAGGG CGAGGCGATC CACGACGAGG TGGAGGCCCG CGTGCTGCAG
GTGGCGCCCG AGGACCTCGG CGTCCTGGGC TACCACGACT TCGTCGAGGG GCTCACGAAC
GGGTACGCCG CCCACCACGC CGGCATGCTG CCGCTGTTCC GCGAGATCGT GGAGGAGCTT
TTCGCCGCCG GGCGCATCCA GTGCGTGTTC GCCACCGAGA CCCTGGCGCT GGGGGTCAAC
ATGCCCGCAC GGACGACCGT CATCGAGAAG CTGGTCAAGT TCAACGGCGA GAACCACGCC
GACCTCACGC CGGCCGAGTA CACGCAGCTC ACGGGACGGG CCGGTCGCCG CGGGATCGAC
GTGGAGGGCC ACGCCGTGGT GCTCTCCGGG CCGCGCGTCG ACCCCACCCA CGTGGCCGGC
CTGGCCTCCA CGCGCACCTT CCCGCTGAAG TCGTCCTTCC GCCCGTCGCC GAACATGGCG
GTGAACCTGG TGGAGCGGAT GGGGCGACAG TCCGCCCGGG AGCTGCTCGA GGAGTCCTTC
GCCCAGTTCC AGGCCGACCG CGCGATGGCG GGCCACTCCC GCGCCGTGGA CCGCAACACC
GAGGCGATCG AGGGCTACCG GGAGGCCATG GAGTGCCACT TGGGTGACTT CTCCGAGTAC
GCCGACCTGC GCCAGCAGCT CGCCCAGGCG GAGAAGGACG CCGCCAAGCG CCGCGGCGCC
GCCCAGCGCG CCCAGGTGGA GCTCGTGCTC GGCGAGCTCG TGCCGGGCGA CGTGGTCCGC
ATCGGCACCG GGCGTCGCGC CGGCCGCGCG GTGGTGATCA CCGGCACCCA CGGGGTCAGC
CGCAAGCACG AGGACGTCGC CCTGGTGACC GATGCGGGGC GCCTGCGCAC CGTCGTGGCC
ACCGACCTCG ACGAGCCGCC GGTGGTGCAG GGCCGGGTAC AGGTGCCCTC CCGTTTCAAC
CCCCGCAAGC CCAAGGACCG CAAGGACCTC GCCGCCACGA TGCGGGCGAA GGTGCCCGAC
GCCGACCCGC CCCCCGGGCG GGGGCGGGGC ACCGCACACG ACGATGCCGG CACCGCGGCC
CCGGCCGAGG ACCGGGCACA CAGGGGGCTC GACCGCATCG ACGAGCTGCG GGCCGCCCTG
AAGCGCCACC CCTGCCACGC CTGCCCGGAC CGGGAGGAAC ACGCCCGCTG GGCGGCCCGC
CTGCACACCC TGGAGCGTGA GACCGCCGGC CTGCAGCGCA AGGTCGCCCG CCGGACGCAC
ACCGTCTCGC GCGCGTTCGA CCGCACCTGC AGCCTGCTGG CCGAGTGGGG CTACCTCACC
GAGGACGGGC AGGAGGTCAC CGAGGCCGGG CGCATCCTGC AACGCACGTA CACCGAGAAG
GACCTGCTCG TGGCCGAGTG CTTGCAGCGC GGCACCTGGC AGGGGCTGGA TGCCGCCGAG
CTGGCCGCCA TCGTCTCGGT GATCATCCAC GAGCCCCGGC GCGGGGAGGT GACGATCAAC
CCGACCATGC CCACCGAGCG GGTGGACCGC GCCTACGAGG GCGTGATCGA CCTGTGGTCC
CGCATCGAGG ACTCGGAGAT CGAGCACCAG CTGCCGCCCA CCGCGCAACC GGACGCGGGG
ATGGCGTGGA TGATGCACAA GTGGGCCTCC GGCGCCCGGC TGGAGATGGT GCTGCGCGAC
TCCGAGCTCT CCGCCGGGGA CTTCGTGCGC CGCGCCAAGC AGGTGGTGGA CCTGCTGGGT
CAGGTCGAAC TCGCGGCGCC GCACGCGTCG GTGCAGGGCA CGGCCCGCAA GGCGATGAAC
CAGGTGCTGC GCGGCGTGGT CGCTGCCGAC CGCCTCGACT GA
|
|---|
| Protein sequence | MSSPSDRFAA AKRRARHPHL QDFLMGQPFQ LDDFQVTACE AVEDGKGALV AAPTGAGKTV
VGEFAVHLAL ATGRKCFYTT PIKALSNQKY HDLAQEYGEA NVGLLTGDSS VNGNAPVVVM
TTEVLRNMLY SDSSTLAGLG FVVMDEVHYL ADRMRGVVWE EVILHLPDDV QVISLSATVS
NAEEFGAWLK QVRGDTEVVV SEVRPVPLWQ HMMVGNDLYD LFPEGGVGAR RGSASAVNPE
LMARLRTAQA ERTAWHREDS GGPAGRRGRG RRGSGRARDD HRDHGGPSRG GPPTRGTGTP
SRTQVVQALH ADGLLPAIVF IFSRIGCDSA VRQLLASGTR LISDEEGEAI HDEVEARVLQ
VAPEDLGVLG YHDFVEGLTN GYAAHHAGML PLFREIVEEL FAAGRIQCVF ATETLALGVN
MPARTTVIEK LVKFNGENHA DLTPAEYTQL TGRAGRRGID VEGHAVVLSG PRVDPTHVAG
LASTRTFPLK SSFRPSPNMA VNLVERMGRQ SARELLEESF AQFQADRAMA GHSRAVDRNT
EAIEGYREAM ECHLGDFSEY ADLRQQLAQA EKDAAKRRGA AQRAQVELVL GELVPGDVVR
IGTGRRAGRA VVITGTHGVS RKHEDVALVT DAGRLRTVVA TDLDEPPVVQ GRVQVPSRFN
PRKPKDRKDL AATMRAKVPD ADPPPGRGRG TAHDDAGTAA PAEDRAHRGL DRIDELRAAL
KRHPCHACPD REEHARWAAR LHTLERETAG LQRKVARRTH TVSRAFDRTC SLLAEWGYLT
EDGQEVTEAG RILQRTYTEK DLLVAECLQR GTWQGLDAAE LAAIVSVIIH EPRRGEVTIN
PTMPTERVDR AYEGVIDLWS RIEDSEIEHQ LPPTAQPDAG MAWMMHKWAS GARLEMVLRD
SELSAGDFVR RAKQVVDLLG QVELAAPHAS VQGTARKAMN QVLRGVVAAD RLD
|
|---|
| |