Gene Ksed_12060 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagKsed_12060 
SymbolaceE 
ID8372714 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameKytococcus sedentarius DSM 20547 
KingdomBacteria 
Replicon accessionNC_013169 
Strand
Start bp1231175 
End bp1233922 
Gene Length2748 bp 
Protein Length915 aa 
Translation table11 
GC content69% 
IMG OID644991484 
Productpyruvate dehydrogenase subunit E1 
Protein accessionYP_003149008 
Protein GI256825048 
COG category[C] Energy production and conversion 
COG ID[COG2609] Pyruvate dehydrogenase complex, dehydrogenase (E1) component 
TIGRFAM ID[TIGR00759] pyruvate dehydrogenase E1 component, homodimeric type 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.00682926 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.280194 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCGACCA AGGATTCCGG ACCGATTCTC AACGGTCTGC CCAGCCAGCT CCCGGACATC 
GACCCCGAGG AGACCGGTGA GTGGTTGGAC TCGCTGGACG GGCTCGTCGA GGAGCGGGGG
CGCGCCCGCG CGCGCTACGT GATGCTGGAG CTGCTCAACC GCTCGCGGGA GCAGCAGGTT
GGCGTCCCCT CGCTGACCAC CACCGACTAC ATCAACACCA TCGGCCCCGA GGCGGAGGCC
TGGTTCCCCG GTGACGAGGA GGTGGAGCGC CGCTACCGCG CCTGGATCCG GTGGAACGCC
GCGATCATGG TGCACCGCGC CCAGCGCCCG GAGATCTCCG TCGGCGGGCA CCTCTCGAGC
TACGCCTCGG CCGCCACCCT CTACGAGGTG GGCTTCAACC ACTTCTTCCG CGGCCGCCAG
CACCCCGGCG GCGGCGACCA GGTCTTCTTC CAGGGCCACG CCTCCCCCGG CATCTACGCC
CGCTCCTTCC TGGAGGGCCG CCTCACCGAG GACCAGCTCA ACGGTTTCCG GCAGGAGAAG
TCCCACTACG TGGACGGCAA GCTCATTGCG CTGCCGAGCT ACCCGCACCC GCGGAGCATG
CCGGACTTCT GGCAGTTCCC GACCGTCTCG ATGGGGCTGG GCCCGCTGGG CGCGATCGCG
CAGGCCCAGT TCAACAAGTA CCTGCACAAC CGCGGCCTGA AGGACACCAG CGACCAGCAC
GTGTGGGCCT TCCTCGGTGA CGGCGAGATG GACGAGCCAG AGTCCCGCGG CGCGCTGCAG
ATCGCGGCGA ACGAGGGCCT GGACAACCTG ACCTTCGTGG TGAACTGCAA CCTGCAGCGT
CTGGACGGTC CGGTGCGCGG CAACGGCAAG ATCGTGCAGG AGCTCGAGGC CTTCTTCCGT
GGCGCAGGGT GGAACGTCAT CAAGGTGCTC TGGGGCCGTG GCTGGGACGA CCTGCTGGCC
GCGGACCGCG ACGGCGCGCT GGTCAACCTC ATGAACTCCA CGCCCGACGG GGACTTCCAG
ACCTTCCGTG CCAACGACGG CGCCTACGTG CGCGAGCACT TCTTCGAGCG CGACCCGCGG
ACCGCCAAGA TGGTCAAGGA CTGGTCCGAC GAGGACATCT GGTGGAAGCT CAAGCGCGGC
GGTCACGACT ACCGCAAGGT CTTCAGCGCC TACCAGGCGG CCATGAACCA CTCCGGCCAG
CCGACGGTGA TCCTCGCCCA CACCATCAAG GGCTACTCGC TCGGCTCGCA CTTCGCCGGG
CGCAATGCCA CGCACCAGAT GAAGAAGCTG ACCGTGGAGG ACCTGAAGGG CTTCCGCGAC
AGCCTGCAGA TCCCGGTGCC GGACTCAGCC TTCGAGGACG ATCAGTTCGC CGCGCCGTAC
TACCACCCCG GCGAGGACGA CGAGACGATC CAGTACATGC TGGACCGCCG CAAGAAGCTG
GGTGGGGACC TGCCGGCCCG CCTCTCCGAG CACGTGCCGC TGACCCTGCC GCCGGAGAAG
ACCTACGAGA TCGGCCGCAA GGGGTCGGGC ACGCAGGCCG TGGCCACCAC GATGGCCTTC
GTCCGCATCC TCAAGGACAT GATGCGGGAT TCCGAGATCG GCAAGCGGAT CGTGCCGATC
ATCCCCGACG AGGCCCGCAC CTTCGGCATG GACGCCTTCT TCCCGACGGC CAAGATCTAC
AACCCCCACG GGCAGAACTA CGAGTCGGTG GATGCCAACC TCATGCTGTC CTACAAGGAG
AGCACCGAGG GGCAGATCCT CCACATGGGC ATCAACGAGG CCGGGTCGGT GGCTGCCTTC
ACCGCCGCGG GGTCGTCCTA CGACACCCAC GACCTGCCGA TGATCCCGGT GTACGTCTTC
TACTCGATGT TCGGCTTCCA GCGCACCGGC GACAGCATCT GGGCTGCCGC CGACCAGCTG
GCGCGCGGCT TCCTCATCGG GGCGACGGCG GGCAAGACGA CGCTGGCGGG GGAGGGCCTG
CAGCACATGG ACGGCCACAG CCCGCTGCTG GCCGCCTCCA ACCCGGCCGT CGTCTCCTAC
GACCCGGCGT TCTCCTACGA GATCTCGCAC CTGATGGCCG AGGGCATGCG CCGCATGTAC
GGCGAGGACG CCGAGAACGT CATCTTCTAC CTGACGGTCT ACAACGAGCC GATGGTGCAG
CCCAAGGAGC CCGAGGACGT CGACGTCGAG GGCATCCTCA AGGGTGGCTA CCTGCTGGCC
GAGGGCGAGG CCGAGGGACC GAAGGCGCGC CTGCTGGCCT CCGGCGTGGG TGTGCCCTGG
GCGCTGGACG CCCAGCAGGA GCTCGCGGAG CGCTGGGGCG TGAACGCCTC GGTGTTCTCC
ATCACCTCCT GGAGCGAGCT GGCCCGCGAG GCCACCCGCT GCGACGAGAA GGCCTTCCTG
CACCCCGACG AGGAGCAGGA GACGCCGTAC GTGCAGCAGC TTCTGCCGGC CGGTGAGGGC
CCGGTCGTGG CCACGAGCGA CTACATGCGC GCCGTGCCCG ACCTCATCGC CCCCTGGGTG
CAGGACGACT ACTACGCCCT GGGCGCCGAC GGGTTCGGCT TCTCCGACAC CCGCCCGGCC
GCCCGGCGGT ACCTGCACAT CGACTCCGCG TCGATGGTGG TCAAGACCCT CCAGCTCCTG
GAGAAGCGAG GCGAGGTGGA GGCCGGCCGC GCCAAGGAGG CCGCCGAGCA CTACCGCCTG
CTCGACACCA CGGCGGGCAC CTCGGGTGAG GCCGGCGGCG ACGCCTGA
 
Protein sequence
MSTKDSGPIL NGLPSQLPDI DPEETGEWLD SLDGLVEERG RARARYVMLE LLNRSREQQV 
GVPSLTTTDY INTIGPEAEA WFPGDEEVER RYRAWIRWNA AIMVHRAQRP EISVGGHLSS
YASAATLYEV GFNHFFRGRQ HPGGGDQVFF QGHASPGIYA RSFLEGRLTE DQLNGFRQEK
SHYVDGKLIA LPSYPHPRSM PDFWQFPTVS MGLGPLGAIA QAQFNKYLHN RGLKDTSDQH
VWAFLGDGEM DEPESRGALQ IAANEGLDNL TFVVNCNLQR LDGPVRGNGK IVQELEAFFR
GAGWNVIKVL WGRGWDDLLA ADRDGALVNL MNSTPDGDFQ TFRANDGAYV REHFFERDPR
TAKMVKDWSD EDIWWKLKRG GHDYRKVFSA YQAAMNHSGQ PTVILAHTIK GYSLGSHFAG
RNATHQMKKL TVEDLKGFRD SLQIPVPDSA FEDDQFAAPY YHPGEDDETI QYMLDRRKKL
GGDLPARLSE HVPLTLPPEK TYEIGRKGSG TQAVATTMAF VRILKDMMRD SEIGKRIVPI
IPDEARTFGM DAFFPTAKIY NPHGQNYESV DANLMLSYKE STEGQILHMG INEAGSVAAF
TAAGSSYDTH DLPMIPVYVF YSMFGFQRTG DSIWAAADQL ARGFLIGATA GKTTLAGEGL
QHMDGHSPLL AASNPAVVSY DPAFSYEISH LMAEGMRRMY GEDAENVIFY LTVYNEPMVQ
PKEPEDVDVE GILKGGYLLA EGEAEGPKAR LLASGVGVPW ALDAQQELAE RWGVNASVFS
ITSWSELARE ATRCDEKAFL HPDEEQETPY VQQLLPAGEG PVVATSDYMR AVPDLIAPWV
QDDYYALGAD GFGFSDTRPA ARRYLHIDSA SMVVKTLQLL EKRGEVEAGR AKEAAEHYRL
LDTTAGTSGE AGGDA