| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ksed_07020 |
|---|
| Symbol | |
|---|
| ID | 8372211 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Kytococcus sedentarius DSM 20547 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013169 |
|---|
| Strand | + |
|---|
| Start bp | 698590 |
|---|
| End bp | 702324 |
|---|
| Gene Length | 3735 bp |
|---|
| Protein Length | 1244 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644990988 |
|---|
| Product | transcription-repair coupling factor Mfd |
|---|
| Protein accession | YP_003148527 |
|---|
| Protein GI | 256824567 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
|---|
| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0711584 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACACT CCGGCCACCT CGTCGGTGGC GCCGCCTACC CTTGGGGAGT GCCCGATGCC
GTGACCCCCC GCTCCGAGAA CAACTCCACC CCCGCCGCGT CCCCCGGTGG GACGGCCCGC
GACACGGCGG ACCTGCCGCC GCTCTCCGGC CTGCTCGACC AGGTGCGTGA GGAGCCCTCC
CTGGCGCGGA TGCTGCAGAT CCACCAGCGC GGGGACCTCG ACGTGGACCT CACGGCCGTC
CCGGGCGTGC GGCCCTGGGC CGCCGCCGTT CTCGCGCGCG AGCTCGAGCC GGCCGGGGGC
GTCGTCCTGC TCGCGACCGC CACCGGGCGG GAGGCCGAGG ACCTCGCGGC CAGCCTGCGT
TCGCTGCTCC CGCCGCAGAG CGTGGCGGTC TTCCCCAGCT GGGAGACCCT GCCGCACGAG
CGGTTGAGCC CGCGCAGCGA CACCGTCGGC CAGCGGCTGG CGGTCCTGCG CCGGCTCGCA
CACCCGGGCC AGGCCGACCA CGACGGGCCA CTGCGGGTGG TCGTCTCCGC GGTGCGCTCA
CTGCTGCAGC CCCTGCCCGC GGGCCTGGGG GACCTCGTGC CGGTGTCCGT CCAGGCCGGC
GAGACCCGGG ACCCGGAGGA GTTCATCGAG GCCCTGGTAG CGGCGGCCTA CGCCCGGACC
GACCTCGTCG AGAAGCGTGG GGAGTTCGCC GTCCGGGGCG GCATCGTCGA CGTCTTCCCG
CCCACCGAGG ACCACCCCCT GCGCGTGGAG TTCTGGGGGG ACGAGGTGGA GGAGGTGCGG
TGGTTCCGGG TGGCAGACCA GCGCTCCCTG GAGATCGCCC CCGGCGGCCT GTGGGCGCCG
CCCTGCCGGG AGTTGCTCCT CACCGAGGAG GTGCAGCAGC GGGCCGCGGG GCTCGCAGAC
GAGCTGCCCG GGGTGGCCGA CATGCTCGCG TCGATTGCTG CGGGCGTGGC GGTCGAGGGC
ATGGAGTCGC TCACCCCGGT GCTGGTTGAC GGCATGGAGA CCCTGCTGGA CGTGCTGCCC
GACGGGTCGC GCCTGCTGGT GAGCGACCCC GAGCGCCTCC GGCGCCGTGC CGCCGACCTC
GTGAGCACCT CCCAGGAGTT CCTCACCGCC GGGTGGTCCT CGGCAGCCGC GGGCGGCCAG
GTGCCGGTGG ACCTCGTCAG CGCCCTGGGC GAGGGCGCCT ACCGCGAGCT CTCCGAGGTC
CGCAGCCACG CCCTGGAGAC GGGTATCGGG TGGTGGGCGC TGTCCCCCTT CGCCCCGGAC
CTGGACACGC TGGACGACGA CGCCACGCAC CTGCGCCTGG ACGCCGTCGA GATGCCCCAG
TACCGCGGAG AGCCCGAGAA GGCGATCGAC GACGTGCGCG CCGCGCTGGC CGCGGGGCGG
CGCGTGGTCC TGCTCACCGA CGGCCCGGGC CTGGCCAAGC GCCTCGTGGA GGTCCTCGGC
GAGCACGAGG TGGGGGCCCG CGTGGTGGCG GCACCCCAGT CCGAGGCCCC CGGGCCGGTG
GCCGAGATCT GCACGGCCTC CTGGGGGCCG GGAGTCGGCC TGCCCGGGGT GGGCGCCGGG
CTCACGATCG TCTCCGAGCA GGACCTGACC GGGCAGGCGG TCAAGGGCTC CACCAAGGAC
ATGCGGCGCA TGCCCTCCCG GCGCCGCAAG ATGGTGGACC CGCTGCAGCT CAACCCGGGC
GACTTCATCG TCCACGAGCA GCATGGGGTG GGGCGCTTCA TCGAGATGGT GCAGCGCACC
GTCGGTGGTG CCACCCGCGA GTACCTGGTG CTGGAGTACG CATCCTCCAA GCGGGGGCAG
CCCGCGGACC GGTTGTTCGT GCCGACCGAC CAGCTCGACC AGATCACCCG CTACGTGGGC
GGCGAGGCCC CGAGTCTCAA CCGGCTCGGG GGCGCCGACT GGTCGAAGAC AAAGTCCAAG
GCGCGCAAGC ACGTCAAGCA GATCGCCAAC GAGCTCATCC AGCTGTACTC GGCCCGGATG
GCGACCCAGG GGCACGCCTT CGCGCCGGAC TCCCCGTGGC AGCGGGAGCT GGAGGACACG
TTCGCCTACA TCGAGACCAC CGACCAGCTC TCCAGCATCG AGGAGGTGAA GGCGGACATG
GAGAAGTCGG TGCCCATGGA CCGCCTCATC TGCGGTGACG TCGGCTACGG CAAGACGGAG
ATCGCCGTCC GCGCGGCCTT CAAGGCGATC CAGGACTCCA AGCAGGTGGC GGTCCTGGTG
CCCACGACCC TGCTGGTCCA GCAGCACCTC CAGACCTTCA CCGAGCGCTA CGCCCAGTTC
CCGGTGACGG TGCGGGCGCT CTCCCGGTTC AGCTCGGACG CGGACGCGAA GGCCACCATC
GAGGGGCTGC GCGACGGGTC GGTCGACCTC GTCATCGGCA CCCACCGCCT GCTCTCCTCG
TCGGTGCGCT TCAAGGACCT CGGGCTGGTC ATCATCGACG AGGAGCAGCG CTTCGGGGTG
GAGCACAAGG AGCAGCTCAA GACGCTGCGC ACCGCGGTCG ACGTGCTGGC CATGTCGGCC
ACCCCCATCC CGCGCACGCT CGAGATGGCG GTCACGGGCA TCCGCGAGAT GTCCACCCTC
GCCACCCCGC CGGAGGAGCG CCACCCGGTG CTCACCTACG TCGGTGCCTA CGAAGAGAAG
CAGATCGCCG CGGCTATCCA CCGCGAGCTG CTCCGTGAGG GGCAGGTGTT CTACGTGCAC
AACAAGGTCG CCACCATCGA CAAGGTCGCC TCGCGCCTGC GCGAGCTCGT GCCCGAGGCG
CGCATCGAGG TCGCCCACGG GCAGATGGGG GAGCACCGCC TCGAGCAGGT GGTCACCGAC
TTCTGGGAGC GCAAGTTCGA CGTGCTGGTC TCGACCACCA TCGTCGAGAC CGGACTGGAC
ATCGCGAACG CGAACACCCT GATCCTGGAC CGGGCGGACA CCTTCGGGCT GTCCCAGCTG
CACCAGCTCC GGGGCCGGGT CGGGCGAGGC CGGGAACGCG CCTACGCCTA CTTCCTGTAC
CCGCCGGAGA AGCCGCTCAC CGAGACCGCG CACGACCGAC TGCGCACCAT CGCCAGCCAC
ACCGACCTGG GTGCCGGCAT GCAGGTGGCC ATGAAGGACC TCGAGATCCG CGGGGCCGGC
AACCTGCTCG GCGGCGAGCA GTCCGGCCAC ATCGCCGGGG TCGGGTTCGA CCTGTACGTC
CGCATGGTCG GGGAGGCCGT CGCCCGCGCC AAGGACGGCA CCGACGGCGA CGCAGAGCCG
GTGGAAGTCA AGGTGGAGCT CCCCGTGGAC GCGCACCTGC CGCACGACTA CGTGCCCGGG
GAGCGGCTGC GCCTGGAGGT CTACAAGAAG CTCGCCGCCG TCAAGGACGA TGCGGAGCTG
GCCGACATCA TCGCTGAGGT CACCGACCGG TACGGCACGC CGCCGCAACC GGTGCGGGCG
CTGTTCGAGG TGGCGCGGCT GCGCACCCTG GCCCGGCGGG CCGGGGTCAG TGACATCTCC
GCGATGGGCT CCAAGATACG GTTCGCGCCG ATGGAGCTGC GCGAGAGCCA GGAGATGCGC
CTGCTGCGGC TCTACCCGGG AACCGTCGTC AAGCCCGCCC TGGGTGCCGT CCTGGTACCG
GTGCCCAAGA CCGCGAAGGT GGGCGGGCAG CCGCTGCGCG ACGCCGAGGT CCTGGAGTGG
GCCGCCCAGC TGCTGCGCGC GGTGCTGCTG GACGACATCG CGGCCGCCGG CGCCGCGGTG
GGGGCCGGGG CGTGA
|
|---|
| Protein sequence | MQHSGHLVGG AAYPWGVPDA VTPRSENNST PAASPGGTAR DTADLPPLSG LLDQVREEPS
LARMLQIHQR GDLDVDLTAV PGVRPWAAAV LARELEPAGG VVLLATATGR EAEDLAASLR
SLLPPQSVAV FPSWETLPHE RLSPRSDTVG QRLAVLRRLA HPGQADHDGP LRVVVSAVRS
LLQPLPAGLG DLVPVSVQAG ETRDPEEFIE ALVAAAYART DLVEKRGEFA VRGGIVDVFP
PTEDHPLRVE FWGDEVEEVR WFRVADQRSL EIAPGGLWAP PCRELLLTEE VQQRAAGLAD
ELPGVADMLA SIAAGVAVEG MESLTPVLVD GMETLLDVLP DGSRLLVSDP ERLRRRAADL
VSTSQEFLTA GWSSAAAGGQ VPVDLVSALG EGAYRELSEV RSHALETGIG WWALSPFAPD
LDTLDDDATH LRLDAVEMPQ YRGEPEKAID DVRAALAAGR RVVLLTDGPG LAKRLVEVLG
EHEVGARVVA APQSEAPGPV AEICTASWGP GVGLPGVGAG LTIVSEQDLT GQAVKGSTKD
MRRMPSRRRK MVDPLQLNPG DFIVHEQHGV GRFIEMVQRT VGGATREYLV LEYASSKRGQ
PADRLFVPTD QLDQITRYVG GEAPSLNRLG GADWSKTKSK ARKHVKQIAN ELIQLYSARM
ATQGHAFAPD SPWQRELEDT FAYIETTDQL SSIEEVKADM EKSVPMDRLI CGDVGYGKTE
IAVRAAFKAI QDSKQVAVLV PTTLLVQQHL QTFTERYAQF PVTVRALSRF SSDADAKATI
EGLRDGSVDL VIGTHRLLSS SVRFKDLGLV IIDEEQRFGV EHKEQLKTLR TAVDVLAMSA
TPIPRTLEMA VTGIREMSTL ATPPEERHPV LTYVGAYEEK QIAAAIHREL LREGQVFYVH
NKVATIDKVA SRLRELVPEA RIEVAHGQMG EHRLEQVVTD FWERKFDVLV STTIVETGLD
IANANTLILD RADTFGLSQL HQLRGRVGRG RERAYAYFLY PPEKPLTETA HDRLRTIASH
TDLGAGMQVA MKDLEIRGAG NLLGGEQSGH IAGVGFDLYV RMVGEAVARA KDGTDGDAEP
VEVKVELPVD AHLPHDYVPG ERLRLEVYKK LAAVKDDAEL ADIIAEVTDR YGTPPQPVRA
LFEVARLRTL ARRAGVSDIS AMGSKIRFAP MELRESQEMR LLRLYPGTVV KPALGAVLVP
VPKTAKVGGQ PLRDAEVLEW AAQLLRAVLL DDIAAAGAAV GAGA
|
|---|
| |