Gene Shel_28200 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_28200 
Symbol 
ID8396708 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp3125174 
End bp3126313 
Gene Length1140 bp 
Protein Length379 aa 
Translation table11 
GC content61% 
IMG OID644987559 
Productaspartate/tyrosine/aromatic aminotransferase 
Protein accessionYP_003145159 
Protein GI257065487 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0436] Aspartate/tyrosine/aromatic aminotransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000110278 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.621857 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGCTGC CTCTGAATTC TGCACTTGAT CGTCTGCAAC TGTCGGGAAT CCGCAAGTTC 
GCAGCTTTGG CGAAAGAAGT TCCCGGATGC ATTTCGCTTA CTATGGGCGA GCCGGGCGAA
AACACCCCCG ACGCCATAAA AGACCAGGTC GCACTGGACT TGGCGGCAAA CATGACGCAC
TATCCGCCCA ACAACGGGCA CGCGTTTTTG AAAGAAGCCA TCTCGGAGTT CATGGCTCGC
CAGGGCCTGG CGTATTCGCC TGACGAGATC ATCGTGACCG CCGGCGCCAC CGAGGCGCTG
TACGCAGCGG CAACGACGGT GCTGAGCCCC GGCGACGAGG TGGTCATCCC CGGCCCCGGC
TTCATCCTGT ACGAATCCAT GACCATCGTT AACCACGGCA CGCCGGTGGT ATTCGACACC
ACGCCGACGA ACTACCAGAT CACGCCCGAG GCGCTGGAGG CTGCGGTGAC CGACCGCACC
AAAGCCATTG TGCTCACGTC GCCCAACAAC CCGACCGGCG TCATCCTCAA CAAGGATAGC
CTGGCGGCTG TGGCGAAAGT GGCCCGCGAG CGCGGCATCT ACGTGATTTG CGACGATGTG
TACAACCAGC TGGTGTACGC CGACGGTTAC AAGAGCTTTG CAGAAAGCTA TCCTGACCTG
CGGGAACAGA CCATCCGCGT GGATAGCTTC AGCAAGCCGT ACGCTATGAC CGGCTGGCGC
ATGGGCTGGA TTGCCGCCGA TGCAAGCTTT ATCGCTCAGG CGTCGAAGAT CCACCAGTAC
ATGGTTTCGT GCATTCCGTC CTTCCTGCAG CATGCCGGCG TCGAGGCGCT GGCCACGGAC
ATCGCACCCA TGCGCAAGAT GTATCGGCAG CGTCGCGACC TGGTGGTTTC GCGCTTGCGC
GAAATGGGTC TTGACCTGGT GGAACCCGAA GGCGCTTTCT ATGCGTTCCC CTCGATCGAG
CAGTTCGGCA TGACCTCCGA GGAGTTCTGC CGCCGCTTGA TTTTCGAAGG CGGCGTGGCC
CTCACGCCGG GCGTGTTCTT CAACGGCGAA GGGCACGTAC GCCCGTCGTT CGCCAGCAGC
TACGACGTGC TTGAAGAGGG GCTCTCCCGC ATGGCAACCT TTGTGGACGG CTTGCGCTAA
 
Protein sequence
MSLPLNSALD RLQLSGIRKF AALAKEVPGC ISLTMGEPGE NTPDAIKDQV ALDLAANMTH 
YPPNNGHAFL KEAISEFMAR QGLAYSPDEI IVTAGATEAL YAAATTVLSP GDEVVIPGPG
FILYESMTIV NHGTPVVFDT TPTNYQITPE ALEAAVTDRT KAIVLTSPNN PTGVILNKDS
LAAVAKVARE RGIYVICDDV YNQLVYADGY KSFAESYPDL REQTIRVDSF SKPYAMTGWR
MGWIAADASF IAQASKIHQY MVSCIPSFLQ HAGVEALATD IAPMRKMYRQ RRDLVVSRLR
EMGLDLVEPE GAFYAFPSIE QFGMTSEEFC RRLIFEGGVA LTPGVFFNGE GHVRPSFASS
YDVLEEGLSR MATFVDGLR