Gene Shel_26510 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_26510 
Symbol 
ID8396539 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp2925639 
End bp2926970 
Gene Length1332 bp 
Protein Length443 aa 
Translation table11 
GC content60% 
IMG OID644987393 
Productsite-specific recombinase XerD 
Protein accessionYP_003145002 
Protein GI257065330 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.938683 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGATACG GAGACGCGGA ACCCCGCGAA AAGCTAGACG CGAACGGCAA AAGCTACAGC 
CCGAAACGAT GGGAGATAGT CCTTTGCCTC GGAGCAGACC CCGTGACCGG GAAGAGGCAG
CGCATAAAGC GTGTTGTCAG GGGCACCAAG TCGGACGCCC GCAAGGCCAG GGACGCCATA
AGGCGCGAAT ACGAAAGCGG CCTCAGCTTC GAGAGCGAAA GCATGGGGTT CTCAGAGTTC
GCCCGCGAAT GGTGCAAGGC AAGGAAAACG ACCGGGGCAC TCAGGGAGAA AACCCTTGCA
CGGGATGAGC AGACGGTAAG GCTGCTCAGC GGCTACCTCG GGAACGTGAA GCTAAAGGAC
ATTACCCCGC AGATGGTGGA AAGGCTCTAC GACGCCATAC GGGAGGACAA GCGCAAGACG
GGAAAGCCCT ACTCCGAAAC GACAATGAAC CGGATGCACG GAACCATGAG GCAGATCATG
GACAAGGCGG AGCGTTACGA CCTGATACTC AGGAACCCGT GCAAGCGGGT AGACCCTCCC
AAGATAGAGG ATTCGGATAG AAAGAGCCTC GGGCGGGCCG AATGCGTGAA GCTGCTCAGG
GCGATAGACT CCGAGGAATC CGAAATGGAG CAGGGGTATA GGGCCAAGGA GCAGCGGCGC
GAGGAATGGA ACGCAGCCAG GAACGCGAAG AAAGGCCCTC GGGGCCGTCT CTACGGCCTG
GGCAACCTGG GACGCCTCGA AGCCGTCAGA ATCGGCCTCG CAACGGGAAT GAGGCTCGGG
GAAGTCCACG GGCTTAAATG GTCTGATGTG GTGTTGGCGG AACGAGGCGG CGAATGGGGC
GGAGTAATCA GCGTGAGCAA GTCCCTCTCA TTCAGCGGGA AACTGCAAAG CCCGAAAACC
AAAGCGGGGA ACCGAAGCAT CAACATCGAC GCGCATACTG CGGAAAGGCT CTCATGGTGG
AAACGCACCC AGGCCGAAAT GCTGGGCAAG ATAGGCAGGG AGCAAGGGCC TGATACGTTC
ATTTGCTGCA ACGACGAGGG CGGCTCGGGG AGCATCCCCA ACTTTGAAAG ATGGTGGAGG
GAGTTCCGAA CCCGTGCGGG TCTCCCGGGC TTGCGATACC ACGAACTCAG GCACACCCAG
GCAACCCAGC TTCTAGCGGC GGGCGTCGAT GTGAAAACGG TGCAGAACCG GATGGGCCAC
GCGAACGCCT CAATCACGCT TGACTGGTAC GCGCACGCGC AGCCCGAGAA CGACGTCAAA
GCGGCTGCTC TCATGGGAGC GATCATGGAG GAAGAGCCGC CCTCGAACGT CGTTCAAATC
CGCACGGCAT AG
 
Protein sequence
MGYGDAEPRE KLDANGKSYS PKRWEIVLCL GADPVTGKRQ RIKRVVRGTK SDARKARDAI 
RREYESGLSF ESESMGFSEF AREWCKARKT TGALREKTLA RDEQTVRLLS GYLGNVKLKD
ITPQMVERLY DAIREDKRKT GKPYSETTMN RMHGTMRQIM DKAERYDLIL RNPCKRVDPP
KIEDSDRKSL GRAECVKLLR AIDSEESEME QGYRAKEQRR EEWNAARNAK KGPRGRLYGL
GNLGRLEAVR IGLATGMRLG EVHGLKWSDV VLAERGGEWG GVISVSKSLS FSGKLQSPKT
KAGNRSINID AHTAERLSWW KRTQAEMLGK IGREQGPDTF ICCNDEGGSG SIPNFERWWR
EFRTRAGLPG LRYHELRHTQ ATQLLAAGVD VKTVQNRMGH ANASITLDWY AHAQPENDVK
AAALMGAIME EEPPSNVVQI RTA