Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_25520 |
Symbol | |
ID | 8396440 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | - |
Start bp | 2824386 |
End bp | 2826227 |
Gene Length | 1842 bp |
Protein Length | 613 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 644987297 |
Product | conserved repeat protein |
Protein accession | YP_003144908 |
Protein GI | 257065236 |
COG category | [R] General function prediction only |
COG ID | [COG5263] FOG: Glucan-binding domain (YG repeat) |
TIGRFAM ID | [TIGR02543] Listeria/Bacterioides repeat |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGGTCG TTTTCTGTAC GGTCGGATTC CTGTTTGCCG GCGCGCCCGA ATCGGCGTTC GCCGCCGACC AGGCCGATGC CGCCCAGGCG GATGCACCTG TCGAGGGCGA CCAGGCAGGG GCCGAAGCTG CGGCAGAGAC GCCCGCGGTC GAAGCCTCCG AAGACGGGGA GGCCGAAGGC GAAACCCCCG AGACGATCGT ATTCACGGTC ACGTTCGATG CAAACGGCGG CACGGTGGAC CCAGCGTTTG CCCAAACCGA CGAGGGCGGC CTGCTGGCGA GCCTTCCCAC TCCTGCGCGC GACGGCTACG TGTTCGAGGG ATGGTACACG GCGACGACCG GCGGAACCGA AGTGACTGCC GAAACGAGCT TCACCCAAGA CTGCACCGTA TACGCGGTTT GGAGCAAGAT CGGGTGGGTG AAAGGTTCCG ACGGCACCTA TCAATACCGC CTGGCCGACG GCACGCTCGT GACGTCGAAG TTCTTCAAGG TGGACGGCAA GACGTATTAC TTCGACAGCA GCGGCGTCAT GCAGACCGGA TGGGAGCAGG TCTCGGGTAA GTGGTACTGG CTCGGCAACA ACGGGGCCAT GCGCACCGGC TGGCAGAACG TTTCCGACAA ATGGTATTGG CTCGGCGGCA ACGGTGTTAT GCGCACGGGC TGGCAGAAAG TCGACGGCAA ATGGTATTAC CTCAAAGGGT CGGGCGCCAT GGTCACCGGA TGGCGCAATG TGTCGGGCAC CTGGTATTAC CTCGACAAGA AGAGCGGCGC CATGCGCACC GGCTGGCAGA GGGTCGACGG CAAGTGGTAT TGGCTGGGCA GCGACGGCGC CATGCGCACC GGCTGGAAGA GCATCAACGG CAAGTGGTAC TACCTCAGGA GTTCGGGCGC CATGGCCACC GAATGGTGCA AGGTGTCGGA CACCTGGTAC TACCTGGGCG GAAACGGGGC CATGCGCACC GGCTGGCAGA AAGTCGACGG CAAATGGTAC TACCTCAAAG GGTCGGGCGC CATGGTCACC GGTTGGTACA AGGTGTCGGG CAGCTGGTAT TACTTTGAGA AATCGGGCGT CATGCCCACG GTCGATTCCC CGGCCATGAC GGCTCTCAAG GATTCGTACG GCGGATCGCT CAAGGTGTTC GGCGGCAGCT ATAATTTGAA TTCGCCCGCA GGTCAGCGGC TTATAGCCCG CGCGAACGCA ATCGCAAACA ACTACGACTT GAGCTTCGTG ATGGTCGACC TGAAAACCGG CATCGGCGTC TGCTACAACC CGAATCAGGT CATGTATTCG GCGTGTTCCA TCAAGGCGCC CTACATCGCG GCCGTCAACA AATACAGTCC CAGCAGCGTG ACTCCGTACT GGCAGGGGCT CATGACCCAG AGCATCACCG TCTCGAACAA CGAGACCTAC TATGCCTGCA AGAACCACTG GGGTCCGGAC CCGCTGATTA GGTTCATGAA CTACACGAAC ACCACGGACC ACTTCAACTA CAACCACTAC TACGCGTTCC TTACCGCGAA CGACCTGGCC AAGATCTGGA TCGGCAACTA CGACTACTTC TATGTGAACA CGAACCAGAA TTCGAAGTGG TGCCGCAGCC TGTACACGCA TTCTTACAGC TCCGTCATCT ACTACGAGCT CGGCCAGACC TACACCGTGC ACAGCAAGCC CGGCTGGATC AACGACGGCG GCGTGTATGA CGCGTTTAAC GACGGCGGCA TCATCATGGA TCCCGGCCAT CCCTACGTGA TCGCGTTGCT GTCCGATGCC TGCGGTCAGT CGGCCCAGCT TAGGAGCCTG CTTCGCGCGC TCGACAATGT CCATACCGAC ATGGTGGATT AA
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Protein sequence | MLVVFCTVGF LFAGAPESAF AADQADAAQA DAPVEGDQAG AEAAAETPAV EASEDGEAEG ETPETIVFTV TFDANGGTVD PAFAQTDEGG LLASLPTPAR DGYVFEGWYT ATTGGTEVTA ETSFTQDCTV YAVWSKIGWV KGSDGTYQYR LADGTLVTSK FFKVDGKTYY FDSSGVMQTG WEQVSGKWYW LGNNGAMRTG WQNVSDKWYW LGGNGVMRTG WQKVDGKWYY LKGSGAMVTG WRNVSGTWYY LDKKSGAMRT GWQRVDGKWY WLGSDGAMRT GWKSINGKWY YLRSSGAMAT EWCKVSDTWY YLGGNGAMRT GWQKVDGKWY YLKGSGAMVT GWYKVSGSWY YFEKSGVMPT VDSPAMTALK DSYGGSLKVF GGSYNLNSPA GQRLIARANA IANNYDLSFV MVDLKTGIGV CYNPNQVMYS ACSIKAPYIA AVNKYSPSSV TPYWQGLMTQ SITVSNNETY YACKNHWGPD PLIRFMNYTN TTDHFNYNHY YAFLTANDLA KIWIGNYDYF YVNTNQNSKW CRSLYTHSYS SVIYYELGQT YTVHSKPGWI NDGGVYDAFN DGGIIMDPGH PYVIALLSDA CGQSAQLRSL LRALDNVHTD MVD
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