Gene Shel_25520 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_25520 
Symbol 
ID8396440 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp2824386 
End bp2826227 
Gene Length1842 bp 
Protein Length613 aa 
Translation table11 
GC content60% 
IMG OID644987297 
Productconserved repeat protein 
Protein accessionYP_003144908 
Protein GI257065236 
COG category[R] General function prediction only 
COG ID[COG5263] FOG: Glucan-binding domain (YG repeat) 
TIGRFAM ID[TIGR02543] Listeria/Bacterioides repeat 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGGTCG TTTTCTGTAC GGTCGGATTC CTGTTTGCCG GCGCGCCCGA ATCGGCGTTC 
GCCGCCGACC AGGCCGATGC CGCCCAGGCG GATGCACCTG TCGAGGGCGA CCAGGCAGGG
GCCGAAGCTG CGGCAGAGAC GCCCGCGGTC GAAGCCTCCG AAGACGGGGA GGCCGAAGGC
GAAACCCCCG AGACGATCGT ATTCACGGTC ACGTTCGATG CAAACGGCGG CACGGTGGAC
CCAGCGTTTG CCCAAACCGA CGAGGGCGGC CTGCTGGCGA GCCTTCCCAC TCCTGCGCGC
GACGGCTACG TGTTCGAGGG ATGGTACACG GCGACGACCG GCGGAACCGA AGTGACTGCC
GAAACGAGCT TCACCCAAGA CTGCACCGTA TACGCGGTTT GGAGCAAGAT CGGGTGGGTG
AAAGGTTCCG ACGGCACCTA TCAATACCGC CTGGCCGACG GCACGCTCGT GACGTCGAAG
TTCTTCAAGG TGGACGGCAA GACGTATTAC TTCGACAGCA GCGGCGTCAT GCAGACCGGA
TGGGAGCAGG TCTCGGGTAA GTGGTACTGG CTCGGCAACA ACGGGGCCAT GCGCACCGGC
TGGCAGAACG TTTCCGACAA ATGGTATTGG CTCGGCGGCA ACGGTGTTAT GCGCACGGGC
TGGCAGAAAG TCGACGGCAA ATGGTATTAC CTCAAAGGGT CGGGCGCCAT GGTCACCGGA
TGGCGCAATG TGTCGGGCAC CTGGTATTAC CTCGACAAGA AGAGCGGCGC CATGCGCACC
GGCTGGCAGA GGGTCGACGG CAAGTGGTAT TGGCTGGGCA GCGACGGCGC CATGCGCACC
GGCTGGAAGA GCATCAACGG CAAGTGGTAC TACCTCAGGA GTTCGGGCGC CATGGCCACC
GAATGGTGCA AGGTGTCGGA CACCTGGTAC TACCTGGGCG GAAACGGGGC CATGCGCACC
GGCTGGCAGA AAGTCGACGG CAAATGGTAC TACCTCAAAG GGTCGGGCGC CATGGTCACC
GGTTGGTACA AGGTGTCGGG CAGCTGGTAT TACTTTGAGA AATCGGGCGT CATGCCCACG
GTCGATTCCC CGGCCATGAC GGCTCTCAAG GATTCGTACG GCGGATCGCT CAAGGTGTTC
GGCGGCAGCT ATAATTTGAA TTCGCCCGCA GGTCAGCGGC TTATAGCCCG CGCGAACGCA
ATCGCAAACA ACTACGACTT GAGCTTCGTG ATGGTCGACC TGAAAACCGG CATCGGCGTC
TGCTACAACC CGAATCAGGT CATGTATTCG GCGTGTTCCA TCAAGGCGCC CTACATCGCG
GCCGTCAACA AATACAGTCC CAGCAGCGTG ACTCCGTACT GGCAGGGGCT CATGACCCAG
AGCATCACCG TCTCGAACAA CGAGACCTAC TATGCCTGCA AGAACCACTG GGGTCCGGAC
CCGCTGATTA GGTTCATGAA CTACACGAAC ACCACGGACC ACTTCAACTA CAACCACTAC
TACGCGTTCC TTACCGCGAA CGACCTGGCC AAGATCTGGA TCGGCAACTA CGACTACTTC
TATGTGAACA CGAACCAGAA TTCGAAGTGG TGCCGCAGCC TGTACACGCA TTCTTACAGC
TCCGTCATCT ACTACGAGCT CGGCCAGACC TACACCGTGC ACAGCAAGCC CGGCTGGATC
AACGACGGCG GCGTGTATGA CGCGTTTAAC GACGGCGGCA TCATCATGGA TCCCGGCCAT
CCCTACGTGA TCGCGTTGCT GTCCGATGCC TGCGGTCAGT CGGCCCAGCT TAGGAGCCTG
CTTCGCGCGC TCGACAATGT CCATACCGAC ATGGTGGATT AA
 
Protein sequence
MLVVFCTVGF LFAGAPESAF AADQADAAQA DAPVEGDQAG AEAAAETPAV EASEDGEAEG 
ETPETIVFTV TFDANGGTVD PAFAQTDEGG LLASLPTPAR DGYVFEGWYT ATTGGTEVTA
ETSFTQDCTV YAVWSKIGWV KGSDGTYQYR LADGTLVTSK FFKVDGKTYY FDSSGVMQTG
WEQVSGKWYW LGNNGAMRTG WQNVSDKWYW LGGNGVMRTG WQKVDGKWYY LKGSGAMVTG
WRNVSGTWYY LDKKSGAMRT GWQRVDGKWY WLGSDGAMRT GWKSINGKWY YLRSSGAMAT
EWCKVSDTWY YLGGNGAMRT GWQKVDGKWY YLKGSGAMVT GWYKVSGSWY YFEKSGVMPT
VDSPAMTALK DSYGGSLKVF GGSYNLNSPA GQRLIARANA IANNYDLSFV MVDLKTGIGV
CYNPNQVMYS ACSIKAPYIA AVNKYSPSSV TPYWQGLMTQ SITVSNNETY YACKNHWGPD
PLIRFMNYTN TTDHFNYNHY YAFLTANDLA KIWIGNYDYF YVNTNQNSKW CRSLYTHSYS
SVIYYELGQT YTVHSKPGWI NDGGVYDAFN DGGIIMDPGH PYVIALLSDA CGQSAQLRSL
LRALDNVHTD MVD