Gene Shel_23700 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_23700 
Symbol 
ID8396259 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp2626270 
End bp2627328 
Gene Length1059 bp 
Protein Length352 aa 
Translation table11 
GC content60% 
IMG OID644987117 
Producthypothetical protein 
Protein accessionYP_003144728 
Protein GI257065056 
COG category[R] General function prediction only 
COG ID[COG3081] Nucleoid-associated protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value6.60407e-05 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.616861 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGATCA ACCACGCCAT CCTGCATGTT TTCGACTTCA TCTCCTGCGT CAACGTATTC 
GCCACCGAAG AGGTGAACTT GGAAGACAAA AGCGCGAAAA GCTACATTTC GAAACATGCG
AACAAGGCTC TGAACAGCCT GGACAACAAG CATGGCGTGT TTTACGAGGA CAGCATGTTC
GCCGAGGAGC TGCAGGCGTA CGCCCAAGGG CAGCGCAGTT TCATGGACAT GTCCCGCAAG
ATTGCAGACT ATCTGGCCGA CGAGCTGGGC CGTCAGCAGA AAGCCGACTC CACCGACCTG
CTCATCGTCG ATTTCGAGGT GCCTGTCAAC GGCAACCAAG GCGGCGAAGC CACCGACGAA
GAGGTGGACG CATCCTTCGA AGGCCAGGCC ATGCGCTATT TCGCCATCCT GCTGCTGGAC
AGCAAGCAGG CCTACATGCA TGAGGTGGGC CGCGGAGACG GCGGCCGCAA CGACATCGCC
CGCCACTTCG CCATCCTGCC GAGCCCCTCG CAGAAGGTGC AGTCCTACGC CGTGATCGAC
CTGATGACCG GCGGCGTAAC TTTGTCCGAC AAGAAACGCC TGATTGCCGG CGAAGAGCGC
TTCCTCCTGG CGGACGGCCT GCTGCAGTGC TCCATGGAGG CGTCCAGCAA GGAGGCCTTC
TCCGCAGTGG CCGACGTGGT GGAAACCGTG GCCAACGAAT ACGGCGCCAA CAGTGCTTTG
GCGCTTTCCA GGGCGAAGGC GTACGCTGCC GAAGTGGCCT TCGACGACGG GGACTTCGAT
TTGGACGAAC TGGGCCGCGA AGTGTTCGAC GGCCGCAGCG ACATGATGGG GCGCTTCGAC
GAATACGCCG CCGAGGAGCA CCTTTCCGGA AAGATGAAAC TGGACAAGGC CGCCGTGCAG
CGCTTCACCA AGAACCACAA GATTCGCACC GACACGGGCA TCGAGATCAC CTTCCCCGCA
GAATACGGGC GCAACCCCGA CTTCATCGAG TTCATCAGCG AGCCTGACGG GCGCATTTCC
ATCTCGTTGA AGAACATCGG CTACATCGAG AACCGCTAG
 
Protein sequence
MKINHAILHV FDFISCVNVF ATEEVNLEDK SAKSYISKHA NKALNSLDNK HGVFYEDSMF 
AEELQAYAQG QRSFMDMSRK IADYLADELG RQQKADSTDL LIVDFEVPVN GNQGGEATDE
EVDASFEGQA MRYFAILLLD SKQAYMHEVG RGDGGRNDIA RHFAILPSPS QKVQSYAVID
LMTGGVTLSD KKRLIAGEER FLLADGLLQC SMEASSKEAF SAVADVVETV ANEYGANSAL
ALSRAKAYAA EVAFDDGDFD LDELGREVFD GRSDMMGRFD EYAAEEHLSG KMKLDKAAVQ
RFTKNHKIRT DTGIEITFPA EYGRNPDFIE FISEPDGRIS ISLKNIGYIE NR