Gene Shel_23490 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_23490 
Symbol 
ID8396238 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp2598375 
End bp2600837 
Gene Length2463 bp 
Protein Length820 aa 
Translation table11 
GC content64% 
IMG OID644987096 
Productmethionine synthase (B12-dependent) 
Protein accessionYP_003144707 
Protein GI257065035 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1410] Methionine synthase I, cobalamin-binding domain 
TIGRFAM ID[TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.136684 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000158862 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTTGGCAA TAACCGATGG AATCGCGAAG GTTCGAAACC GCGACCAGGT CCGCACGAAG 
GACGAATACC TGGCGGCCGT GCTGCGCGGC GAAGCTTACC TGGTGTTCGA CGGTGCTATG
GGCACCATGC TGCAGGCATC CGGCATGGAG GCCGGCGAGC TGCCCGAGCT CTTGTGCCTG
ACCGACCCTG CGGGCGTGAC CGCCATCCAT AGGCAGTATG TGGAAGCGGG CAGCCAGGCC
ATCACCACGA ACACTTTCGG CGCGAATGCC CGCAAACTGG GCGATGCCGC CACGGTCGAG
GACGTCTTCG CCGCCGCCGT CGCCTGTGCC CGCGAATCCG GGGCGCGCTA CGTGGCGGGC
GACATCGGGC CGACGGGCGG GCTGCTGGAG CCTTTGGGGA CCATGAGCTT CGACGAGGCA
TACGACCTGT TCGCCCAAGA GGTGCGGGCG GCCGATGCGG CCGGCGCCGA CCTGCTGGTC
ATCGAGACCA TGGCCGACCT TCTGGAGATG AAGGCCGCCG TACTGGCCGC AAAAGAGAAC
TCTGACCTGC CGATATTCGC AACCATGACC TTCGGCGAAG ACGGCCGTAC GTTCTTGGGC
ACCAGCCCGC AGATCGCTGC GCTCACGTTG GACGCCTTGG GCGTGAACGT GCTGGGCGTG
AACTGCTCGC TGGGGCCGTC CGATCTGCAG CCTATCGTGT CTGCCATGCT GGAGACAGCC
ACCTGCCCTG TGATGGCGCA GGCCAACGCG GGCCTTCCTT CGGTGGTGGA CGGCCATACC
GTGTACAGCA TCATGCCTGA TGAATACGCC AACGCCGTGC AAGCCATGGT GGACGAAGGG
GTGTCGGTCA TCGGCGGCTG CTGCGGCACG AATCCCGACT ACATCCGCCA GCTGGCGGCC
ATGGTGGAAG GGAAGCGTCC GCCGCACCGC GAGGTGGAAA CGCCGTTCAG CCTGACCAGC
GCCCAAAACG CCGTGGTGCT GCGCGGTCGG GAAGTGGCCG TCATCGGCGA ACGCATCAAT
CCGACAGGCA AAAAGCGCCT GAAGGAGGCT CTGCGCACCA AGGATTACAA CTATGTTCTT
AACGAGGCCA TTTCCCAAAC CGAGGCGGGC GCGGATGTTC TGGATGTGAA CGCGGGCCTG
CCGGAGATCG ACGAGGCGGC AACGCTGGTG ACCCTTGTGG GGCAGATCCA AGGCGTGTCG
GGCCTGCCGC TGCAGATCGA TTCGGCGGAC CCTGCCGCCG TGGAGGCCGC TGTTCGGGTG
TATTCAGGAA AACCCCTGAT CAACTCTGTC AATGGCAAGC AGGAGAGTTT GGATGCGGTG
CTTCCTGTGG CCAAACATTA CGGATGCGCA GTGGTAGGGC TCACGCTGGA CGAGAACGGC
ATTCCGCCGA CGGGGGAAGA ACGGTTCGCC ATTGCCGCGC GCATCGTGGA AGCCGCCGAA
GCCTACGGCA TACCCCGCAG CCACGTCGCC ATCGACTGCC TGGTGATGGC CGCATCCACC
AACCAGCAGG AGGTCGTCGA GATACTCAAG GGCGTCACGC TCGTGAAGGA GCGGTTGGGC
GTCCGCACGG TTCTGGGCGT TTCCAACGTG AGTTTCGGTT TGCCATTGCG CGAAATCGTG
AACGCGACGT TTCTGTCCGC GGCGTTTGCC GCCGGCCTGG ACATGCCCAT CCTCAATCCC
ATGGCCACCC GTTACAAAGA GGTGGTGGAC ACCTGGCGTG TGCTGTGCGC GCAGGATGAG
GGCGCGGCGG GCTATATTGC CGAATACGCG GGCAAAACCC TTGATGCGGG GGCTGTCGCG
CAGGCGCCGG CTGCCGAAGG GGCTCCTGGG TCTTCCGCCG AAGATGACGG AAGCATCCGT
CACCTCATCA TCACGGGCCG CAAGGGCGAC ATGGTGCAAG CCACCCAGGC GCTGCTGGCC
GACCACGACG CCATGGAGGT CATCAACGAG CACCTGATTC CCGCACTTGA CGAGGTGGGC
GCCCTGTTCG AGAAGGGAAC CTTCTTCTTG CCGCAGCTCA TGGCGTCGGC GGAAGCCGCC
AAGGCTGGGT TCGACGTCAT CCGCAGCAAC GCTTCGGAAG GCGACGTGGA CGAGAAGGGA
AGCGTGGCTG TGGCCACGGT CAAGGGCGAC ATCCACGACA TCGGCAAGAA CATCGTGCGC
ATGTTGCTGG AAAACTACGG CTATCGCGTC TATGACCTGG GGCGGGACGT CGACCCCGAG
CTCATCGTGC AAACGGTGCA GGAACACGAC ATCAAGCTGG TGGGCCTGTC GGCGCTCATG
ACCACCACGG TGCACAACAT GGAGGAGGCC ATCAAGCTTC TACGTGAGAA GGCGCCCGAC
GTGAAGGTCA TGGTGGGTGG CGCGGTGCTC AATCCCGAGT ACGCCCGCAT GGTCGGGGCG
GATTTCTACG CGAAGGATGC CGCCGAAAGC GCCCGCATCG CTGGCGAGGT GCTGGGCTCG
TAG
 
Protein sequence
MLAITDGIAK VRNRDQVRTK DEYLAAVLRG EAYLVFDGAM GTMLQASGME AGELPELLCL 
TDPAGVTAIH RQYVEAGSQA ITTNTFGANA RKLGDAATVE DVFAAAVACA RESGARYVAG
DIGPTGGLLE PLGTMSFDEA YDLFAQEVRA ADAAGADLLV IETMADLLEM KAAVLAAKEN
SDLPIFATMT FGEDGRTFLG TSPQIAALTL DALGVNVLGV NCSLGPSDLQ PIVSAMLETA
TCPVMAQANA GLPSVVDGHT VYSIMPDEYA NAVQAMVDEG VSVIGGCCGT NPDYIRQLAA
MVEGKRPPHR EVETPFSLTS AQNAVVLRGR EVAVIGERIN PTGKKRLKEA LRTKDYNYVL
NEAISQTEAG ADVLDVNAGL PEIDEAATLV TLVGQIQGVS GLPLQIDSAD PAAVEAAVRV
YSGKPLINSV NGKQESLDAV LPVAKHYGCA VVGLTLDENG IPPTGEERFA IAARIVEAAE
AYGIPRSHVA IDCLVMAAST NQQEVVEILK GVTLVKERLG VRTVLGVSNV SFGLPLREIV
NATFLSAAFA AGLDMPILNP MATRYKEVVD TWRVLCAQDE GAAGYIAEYA GKTLDAGAVA
QAPAAEGAPG SSAEDDGSIR HLIITGRKGD MVQATQALLA DHDAMEVINE HLIPALDEVG
ALFEKGTFFL PQLMASAEAA KAGFDVIRSN ASEGDVDEKG SVAVATVKGD IHDIGKNIVR
MLLENYGYRV YDLGRDVDPE LIVQTVQEHD IKLVGLSALM TTTVHNMEEA IKLLREKAPD
VKVMVGGAVL NPEYARMVGA DFYAKDAAES ARIAGEVLGS