Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_23490 |
Symbol | |
ID | 8396238 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | - |
Start bp | 2598375 |
End bp | 2600837 |
Gene Length | 2463 bp |
Protein Length | 820 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644987096 |
Product | methionine synthase (B12-dependent) |
Protein accession | YP_003144707 |
Protein GI | 257065035 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1410] Methionine synthase I, cobalamin-binding domain |
TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain [TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.136684 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.0000158862 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTTGGCAA TAACCGATGG AATCGCGAAG GTTCGAAACC GCGACCAGGT CCGCACGAAG GACGAATACC TGGCGGCCGT GCTGCGCGGC GAAGCTTACC TGGTGTTCGA CGGTGCTATG GGCACCATGC TGCAGGCATC CGGCATGGAG GCCGGCGAGC TGCCCGAGCT CTTGTGCCTG ACCGACCCTG CGGGCGTGAC CGCCATCCAT AGGCAGTATG TGGAAGCGGG CAGCCAGGCC ATCACCACGA ACACTTTCGG CGCGAATGCC CGCAAACTGG GCGATGCCGC CACGGTCGAG GACGTCTTCG CCGCCGCCGT CGCCTGTGCC CGCGAATCCG GGGCGCGCTA CGTGGCGGGC GACATCGGGC CGACGGGCGG GCTGCTGGAG CCTTTGGGGA CCATGAGCTT CGACGAGGCA TACGACCTGT TCGCCCAAGA GGTGCGGGCG GCCGATGCGG CCGGCGCCGA CCTGCTGGTC ATCGAGACCA TGGCCGACCT TCTGGAGATG AAGGCCGCCG TACTGGCCGC AAAAGAGAAC TCTGACCTGC CGATATTCGC AACCATGACC TTCGGCGAAG ACGGCCGTAC GTTCTTGGGC ACCAGCCCGC AGATCGCTGC GCTCACGTTG GACGCCTTGG GCGTGAACGT GCTGGGCGTG AACTGCTCGC TGGGGCCGTC CGATCTGCAG CCTATCGTGT CTGCCATGCT GGAGACAGCC ACCTGCCCTG TGATGGCGCA GGCCAACGCG GGCCTTCCTT CGGTGGTGGA CGGCCATACC GTGTACAGCA TCATGCCTGA TGAATACGCC AACGCCGTGC AAGCCATGGT GGACGAAGGG GTGTCGGTCA TCGGCGGCTG CTGCGGCACG AATCCCGACT ACATCCGCCA GCTGGCGGCC ATGGTGGAAG GGAAGCGTCC GCCGCACCGC GAGGTGGAAA CGCCGTTCAG CCTGACCAGC GCCCAAAACG CCGTGGTGCT GCGCGGTCGG GAAGTGGCCG TCATCGGCGA ACGCATCAAT CCGACAGGCA AAAAGCGCCT GAAGGAGGCT CTGCGCACCA AGGATTACAA CTATGTTCTT AACGAGGCCA TTTCCCAAAC CGAGGCGGGC GCGGATGTTC TGGATGTGAA CGCGGGCCTG CCGGAGATCG ACGAGGCGGC AACGCTGGTG ACCCTTGTGG GGCAGATCCA AGGCGTGTCG GGCCTGCCGC TGCAGATCGA TTCGGCGGAC CCTGCCGCCG TGGAGGCCGC TGTTCGGGTG TATTCAGGAA AACCCCTGAT CAACTCTGTC AATGGCAAGC AGGAGAGTTT GGATGCGGTG CTTCCTGTGG CCAAACATTA CGGATGCGCA GTGGTAGGGC TCACGCTGGA CGAGAACGGC ATTCCGCCGA CGGGGGAAGA ACGGTTCGCC ATTGCCGCGC GCATCGTGGA AGCCGCCGAA GCCTACGGCA TACCCCGCAG CCACGTCGCC ATCGACTGCC TGGTGATGGC CGCATCCACC AACCAGCAGG AGGTCGTCGA GATACTCAAG GGCGTCACGC TCGTGAAGGA GCGGTTGGGC GTCCGCACGG TTCTGGGCGT TTCCAACGTG AGTTTCGGTT TGCCATTGCG CGAAATCGTG AACGCGACGT TTCTGTCCGC GGCGTTTGCC GCCGGCCTGG ACATGCCCAT CCTCAATCCC ATGGCCACCC GTTACAAAGA GGTGGTGGAC ACCTGGCGTG TGCTGTGCGC GCAGGATGAG GGCGCGGCGG GCTATATTGC CGAATACGCG GGCAAAACCC TTGATGCGGG GGCTGTCGCG CAGGCGCCGG CTGCCGAAGG GGCTCCTGGG TCTTCCGCCG AAGATGACGG AAGCATCCGT CACCTCATCA TCACGGGCCG CAAGGGCGAC ATGGTGCAAG CCACCCAGGC GCTGCTGGCC GACCACGACG CCATGGAGGT CATCAACGAG CACCTGATTC CCGCACTTGA CGAGGTGGGC GCCCTGTTCG AGAAGGGAAC CTTCTTCTTG CCGCAGCTCA TGGCGTCGGC GGAAGCCGCC AAGGCTGGGT TCGACGTCAT CCGCAGCAAC GCTTCGGAAG GCGACGTGGA CGAGAAGGGA AGCGTGGCTG TGGCCACGGT CAAGGGCGAC ATCCACGACA TCGGCAAGAA CATCGTGCGC ATGTTGCTGG AAAACTACGG CTATCGCGTC TATGACCTGG GGCGGGACGT CGACCCCGAG CTCATCGTGC AAACGGTGCA GGAACACGAC ATCAAGCTGG TGGGCCTGTC GGCGCTCATG ACCACCACGG TGCACAACAT GGAGGAGGCC ATCAAGCTTC TACGTGAGAA GGCGCCCGAC GTGAAGGTCA TGGTGGGTGG CGCGGTGCTC AATCCCGAGT ACGCCCGCAT GGTCGGGGCG GATTTCTACG CGAAGGATGC CGCCGAAAGC GCCCGCATCG CTGGCGAGGT GCTGGGCTCG TAG
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Protein sequence | MLAITDGIAK VRNRDQVRTK DEYLAAVLRG EAYLVFDGAM GTMLQASGME AGELPELLCL TDPAGVTAIH RQYVEAGSQA ITTNTFGANA RKLGDAATVE DVFAAAVACA RESGARYVAG DIGPTGGLLE PLGTMSFDEA YDLFAQEVRA ADAAGADLLV IETMADLLEM KAAVLAAKEN SDLPIFATMT FGEDGRTFLG TSPQIAALTL DALGVNVLGV NCSLGPSDLQ PIVSAMLETA TCPVMAQANA GLPSVVDGHT VYSIMPDEYA NAVQAMVDEG VSVIGGCCGT NPDYIRQLAA MVEGKRPPHR EVETPFSLTS AQNAVVLRGR EVAVIGERIN PTGKKRLKEA LRTKDYNYVL NEAISQTEAG ADVLDVNAGL PEIDEAATLV TLVGQIQGVS GLPLQIDSAD PAAVEAAVRV YSGKPLINSV NGKQESLDAV LPVAKHYGCA VVGLTLDENG IPPTGEERFA IAARIVEAAE AYGIPRSHVA IDCLVMAAST NQQEVVEILK GVTLVKERLG VRTVLGVSNV SFGLPLREIV NATFLSAAFA AGLDMPILNP MATRYKEVVD TWRVLCAQDE GAAGYIAEYA GKTLDAGAVA QAPAAEGAPG SSAEDDGSIR HLIITGRKGD MVQATQALLA DHDAMEVINE HLIPALDEVG ALFEKGTFFL PQLMASAEAA KAGFDVIRSN ASEGDVDEKG SVAVATVKGD IHDIGKNIVR MLLENYGYRV YDLGRDVDPE LIVQTVQEHD IKLVGLSALM TTTVHNMEEA IKLLREKAPD VKVMVGGAVL NPEYARMVGA DFYAKDAAES ARIAGEVLGS
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