Gene Shel_21930 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_21930 
Symbol 
ID8396082 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp2431940 
End bp2432899 
Gene Length960 bp 
Protein Length319 aa 
Translation table11 
GC content59% 
IMG OID644986941 
Productribose-phosphate pyrophosphokinase 
Protein accessionYP_003144552 
Protein GI257064880 
COG category[F] Nucleotide transport and metabolism
[E] Amino acid transport and metabolism 
COG ID[COG0462] Phosphoribosylpyrophosphate synthetase 
TIGRFAM ID[TIGR01251] ribose-phosphate pyrophosphokinase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00246187 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGCTGACCG AGATGACGAA GGAGATGGCA ATTTTCAGCG GTTCGGTGAA TCCGAAGCTT 
GCTGAGGAGA TCGCCGATCA GTTGGGCATG CCGTTGGGCA ACATCAAACA CGAGAAGTTC
GCGAACGGCG AAATCTACTG CCGCTACCTC GAGAACATCC GCGGCGATGA CGTGTTCTTG
ATCCAGTCCG TCGCCGGCGA GCACATCAAC GACGCGCTCA TGGAGCTGCT CATCATGATC
GATGCTGCCA AGCGCGCATC CGCCCGCTCC ATTTCGGCCG TCATCACGCA TTACGGCTAC
GCTCGTCAGG AGCGCAAGGC TTCTCCCCGC GAGCCCATTA CGGCGAAGCT TGTTGCCGAC
ATGCTTCAGG TCGCCGGTAT TTCGAACATC ATCACCATCG ACCTGCATGC GGCTGCAACC
CAGGGCTTCT TCAACGTCCC GGTGAACCAC ATGACTGCAC TGCCGATTTT TGTTGACTAC
TTCAAGCAGA AGGGCTTCGA CCCCGCGAGC CTGTGCGTGG TGTCGCCTGA TGTGGGTCGC
GCCAAGGAAG CCAAGAAGAT GCAGATGCGG CTCGATTCCG ACATCGCCAT CATGCATAAG
GACCGCCCGC GCCACAACCA GGCCGAGATT ACCGCGCTCA TCGGCGACGT CGAGGGCAAG
ATCTGCATCA TCAACGACGA CATGATCGAC ACGGCCGGAT CCCTGGTGGC CGCCGCCGCA
ACGCTGAAGG CAAAGGGTGC CGAGCGCATC TTCGCTTGCG CGACGCACGG CATCTTCAGC
GGTCCCGCTT ACGATCGTAT CGAGAACTCG ATCATCGAAG AGGTCGTCGT CTCCAACACG
ATTCCTGTTC CGCTGGAGCG TCAGACTGGC AAGATAAAGG TGCTGTCCGT GGCGCCGCTG
CTTGCCAAGA CCATGAAGGC CGCTTACGAG AACGGGTCGA TTTCCGCCCT GTTCAACTAG
 
Protein sequence
MLTEMTKEMA IFSGSVNPKL AEEIADQLGM PLGNIKHEKF ANGEIYCRYL ENIRGDDVFL 
IQSVAGEHIN DALMELLIMI DAAKRASARS ISAVITHYGY ARQERKASPR EPITAKLVAD
MLQVAGISNI ITIDLHAAAT QGFFNVPVNH MTALPIFVDY FKQKGFDPAS LCVVSPDVGR
AKEAKKMQMR LDSDIAIMHK DRPRHNQAEI TALIGDVEGK ICIINDDMID TAGSLVAAAA
TLKAKGAERI FACATHGIFS GPAYDRIENS IIEEVVVSNT IPVPLERQTG KIKVLSVAPL
LAKTMKAAYE NGSISALFN