Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_21910 |
Symbol | |
ID | 8396080 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | - |
Start bp | 2427463 |
End bp | 2430771 |
Gene Length | 3309 bp |
Protein Length | 1102 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644986939 |
Product | single-stranded-DNA-specific exonuclease RecJ |
Protein accession | YP_003144550 |
Protein GI | 257064878 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
TIGRFAM ID | [TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0138959 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACTGCGC AATTCGAGAT TCGCGGAGCC GAGCCCTCCG CAGTTGCTGC TATTCAACAA GAGTTCGGGC TGCCGCGTTT CGTGGCGGCC ACCATGGTCG CGCATGGCGT CAAAACGCTG GAGGAGGCCC GGCACTTCCT CAACCCTGAT TTGGATGAGG ACTGGCGGAA CCCCTACGAC ATCCCCCAGA TGAAAGAAGC GGCAGACCGC GTGGAGGCAG CCATCCGCAA CAACGAGACC ATCCTCGTGT TCGGCGATTT CGACCTCGAC GGCATCTCGG CGACCACGGT GCTGACCCGC GGCCTGCGTT CGCTGGGGGC CGACGCCCAT TGGCTTATAC CCCGCCGCTT CGAGGAGGGC TACGGCCTGT CCGACGCCGC CATCGCCCGT GCGCAGACGG AATGCGATCC CGACCTCATC ATCACAGTGG ACTGCGGCAT CTCCTGCAAG GACGAGGCCG AAACGGTGAA GTCCCTGGGT ATGGAGCTGG TGGTGACCGA CCATCACGAA CCCAGCGAGA ACGTTCCCGA AGGCATCATC GTCGTCGACC CGAAGTGCTG CGAGGATAAT CCCAGCAGCA TCCTGGCCGG CGTCGGCGTG GCGCTCAAGC TGGTCCAGGT CCTGGGCGCC CGCTTCGGTG AGCCGTACCT GTGGCGCCAA TACACCGATC TGGCAACACT GGGTACCGTG GCCGACCTCA TGCCGCTGAG GGATGAGAAC CGCGCCCTGG TGGCCGACGG CCTGAGGCAG ATCAATACCA ACCCGCGCCC CTGCATCGCG GCGCTCATCG GCGTATGCAA CGTGGCGGAC AAGGAGCTCA CGTCCACCAA CCTGTCCTTC TCCCTCATTC CACGGTTGAA CGCGGCCGGA CGCATGGGGG ATGCCGGTTT GGCGGCGAAA CTCCTGATGG AAGACGATTT CGGCGAAGCC CAGAAGCTCG CGGCCGAACT GGACGCCGTC AACGACCAGC GTCGCTCCAT CGAGGCGGAC CTGGCCGCCG TGGCAAAGGA GCAGGCCGAG AAGATCTACG ACGGGCAGCG CGCGCTGGTG GTCGCAGGCG AAGGTTGGCA TGAGGGCGTG AAGGGTATCG TCGCATCGCG CCTGGTCAAT ACCTATGGCG TTCCGTCTAT TCTCTTCACC ATCACCGGCG ACGAGGCGCG CGGCAGCGGC CGCAGCGTCG GCCAGGTGAA CCTGTTCAAG GCCGTCGAGT CGCTGTCTGA CATGCTCGTC CGCTTCGGAG GGCATGCTGC TGCGGTGGGC GTGACCGTTC CCACCGACAG GCTCCCAGAA TTCAACGAGC GCCTGTGCGC CTACATGGAT TCGCTGCCGG AAAGCAGCTT CCATCCCCTG ATCACCATCG ACACGCCGGT CGATTTGGAC GAGCTCACCA TCGAGAACGT GGAACAGCTC GAGCGGCTTG CCCCCTTCGG GCAGGAGAAC CCGACGCCCA GGCTTTTGGC CCGCAACGTG CGCATCGTCA ACGCCCGGGC CGTGGGCGCG GCGAAAAACC ATCTGTCCTG CTCGTTGACG GACGGCGTTT CCCGCGTGGA CGGCATCATG TTCCACTGCG AAGGCATCGA GGGGCTCATG GCCTGCGGCG GCGTGGTCGA CGCCGTGTTC GAGGTGGAAA TAGACGAATG GCGTGGCCGC CGCAAGGTGA AGTGCATGCT CAAGGCCGTC GAGCCAACGG CGACGTGCCC GGCCCTGTCC GCCTGCCTGC CCTCCGACGA CCTTGAGTTC ATCGGCGAGA TGTATGATGA ATGGGACGGC GGCCAAGACG ATGACGACGA CGGGTTCGAT CCGCTGTCGC CCGAGGCCAA ACAGCTCTGG ATCACCGAAG CCACCGGCGA TGGCAGCACG TTGGAGGATG CCATCATCGC GTCGCTCATC GGCGACGCGA GCAAGCTGCA TGCCGCTCAG CGTGCGGCGC TGCAGTCGCT GGACGCCAAA AAGAACACCT TGGTCGTCAT GGGTACGGGC CGGGGCAAGT CCCTCATCTT CCAGACGAAG GCGGCGCACC TCGCTTTGAA CGAGCATGCG GCCAGCCTGT TCGTGTACCC GCTGCGCGCC CTGATCGACG ACCAGTGGTA CCTGATGAAG GAGCTGTTCG AACCCTTCGG GCTGGAGGTG GCCTCGCTTA CGGGCGAAAC CTCCGCCGAC GAGCGCCAGC GCGTGTACCG AGGTCTGGCC GACGGCACCA TCGACGTGGT TCTGACCACA CCCGAATACG CCGTCTACCA CATCGATGAC ATCGCCGCCA GCGGCCGCAT CAAGCTGATG GTGGTGGACG AGGCCCACCA CATGGCCGAA ATGGGAACCC GTAAGCGCGC GGCATACGGC GCCATGGGCA CGCTGGCCGA AAAGCTCGGC AACCCGACGG TGCTGGCGCT TACCGCCACG GGCCCCACGA AGGTTGCCAA CATAACCGAC AGCATCCTTG GCATCGAGCA GCACGTGCTG GACGACACCA TCCGGCCCAA CCTGCAGATG GACGACCGCC GCAACCTGCG CGACAAGGAC AGCTATCTGG CGGGTATCGT CGCGACCGGC GAGAAAACCA TCATCTACGT CAACTCCCGC ATGGGGACGG TGGATCTGGC CCGTACGCTG CGGACCATGG TTCCCCAGGT CGCCATGCAG ATCGGCTTCT ACAACGCCGG CATGTCCCGC GACGAGCGCG AACGCATCGG ACAGCTCTTC CGCGACGACG TGCTCAAAGT GCTCGTGTGC ACGTCGGCCT TCGGCGAAGG CGTCAACATC CCCGACGTGC GCCACGTGGT GCTGTACGGA ATGCCCTTCT CGGAAATCGA GTTCAACCAG ATGAGCGGCC GCGCCGGCCG CGACGGCACC GAAGCCACCA TCCATCTGCT GTTCGGTCGC CGCGATGCGG AGGTGTGCGA ACGCATCCTG CGGACCGCCG CACCGTCCCA CGACGACATG GCCCAGATCT ACCGAACGCT TCGGCACATG CAGTCGGAAC GGCCCGATGA TGCGTTCTTC CCCATGGACG ACGTGGAGCT CGCCTCGGCC TGCGGACGCT CCACCATCAC TCCCGAATCC TGCGCCGCCG GCATCGCCGT TTTCTCAGAG CTCGGCCTGG TCGAGGTCCG CGAGGCGTCG GAGGATGCTC CTCGCCAGAT TCGCGTTCCG AACGCCAAAA GCAGGGTGGA ATTGACCGAT AGTGTATATT ATCGTGAAGG GATTGAAGAA CTAGACGCTT TTACGCGGTT CAAGGACTGG GCCCTTCGTA GTACAGCCGA TATGTTGCGT TCGCATATGA TCACGCCCAT CCTGCCGCAT GGTGAATAA
|
Protein sequence | MTAQFEIRGA EPSAVAAIQQ EFGLPRFVAA TMVAHGVKTL EEARHFLNPD LDEDWRNPYD IPQMKEAADR VEAAIRNNET ILVFGDFDLD GISATTVLTR GLRSLGADAH WLIPRRFEEG YGLSDAAIAR AQTECDPDLI ITVDCGISCK DEAETVKSLG MELVVTDHHE PSENVPEGII VVDPKCCEDN PSSILAGVGV ALKLVQVLGA RFGEPYLWRQ YTDLATLGTV ADLMPLRDEN RALVADGLRQ INTNPRPCIA ALIGVCNVAD KELTSTNLSF SLIPRLNAAG RMGDAGLAAK LLMEDDFGEA QKLAAELDAV NDQRRSIEAD LAAVAKEQAE KIYDGQRALV VAGEGWHEGV KGIVASRLVN TYGVPSILFT ITGDEARGSG RSVGQVNLFK AVESLSDMLV RFGGHAAAVG VTVPTDRLPE FNERLCAYMD SLPESSFHPL ITIDTPVDLD ELTIENVEQL ERLAPFGQEN PTPRLLARNV RIVNARAVGA AKNHLSCSLT DGVSRVDGIM FHCEGIEGLM ACGGVVDAVF EVEIDEWRGR RKVKCMLKAV EPTATCPALS ACLPSDDLEF IGEMYDEWDG GQDDDDDGFD PLSPEAKQLW ITEATGDGST LEDAIIASLI GDASKLHAAQ RAALQSLDAK KNTLVVMGTG RGKSLIFQTK AAHLALNEHA ASLFVYPLRA LIDDQWYLMK ELFEPFGLEV ASLTGETSAD ERQRVYRGLA DGTIDVVLTT PEYAVYHIDD IAASGRIKLM VVDEAHHMAE MGTRKRAAYG AMGTLAEKLG NPTVLALTAT GPTKVANITD SILGIEQHVL DDTIRPNLQM DDRRNLRDKD SYLAGIVATG EKTIIYVNSR MGTVDLARTL RTMVPQVAMQ IGFYNAGMSR DERERIGQLF RDDVLKVLVC TSAFGEGVNI PDVRHVVLYG MPFSEIEFNQ MSGRAGRDGT EATIHLLFGR RDAEVCERIL RTAAPSHDDM AQIYRTLRHM QSERPDDAFF PMDDVELASA CGRSTITPES CAAGIAVFSE LGLVEVREAS EDAPRQIRVP NAKSRVELTD SVYYREGIEE LDAFTRFKDW ALRSTADMLR SHMITPILPH GE
|
| |