Gene Shel_21910 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_21910 
Symbol 
ID8396080 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp2427463 
End bp2430771 
Gene Length3309 bp 
Protein Length1102 aa 
Translation table11 
GC content64% 
IMG OID644986939 
Productsingle-stranded-DNA-specific exonuclease RecJ 
Protein accessionYP_003144550 
Protein GI257064878 
COG category[L] Replication, recombination and repair 
COG ID[COG0608] Single-stranded DNA-specific exonuclease 
TIGRFAM ID[TIGR00644] single-stranded-DNA-specific exonuclease RecJ 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0138959 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTGCGC AATTCGAGAT TCGCGGAGCC GAGCCCTCCG CAGTTGCTGC TATTCAACAA 
GAGTTCGGGC TGCCGCGTTT CGTGGCGGCC ACCATGGTCG CGCATGGCGT CAAAACGCTG
GAGGAGGCCC GGCACTTCCT CAACCCTGAT TTGGATGAGG ACTGGCGGAA CCCCTACGAC
ATCCCCCAGA TGAAAGAAGC GGCAGACCGC GTGGAGGCAG CCATCCGCAA CAACGAGACC
ATCCTCGTGT TCGGCGATTT CGACCTCGAC GGCATCTCGG CGACCACGGT GCTGACCCGC
GGCCTGCGTT CGCTGGGGGC CGACGCCCAT TGGCTTATAC CCCGCCGCTT CGAGGAGGGC
TACGGCCTGT CCGACGCCGC CATCGCCCGT GCGCAGACGG AATGCGATCC CGACCTCATC
ATCACAGTGG ACTGCGGCAT CTCCTGCAAG GACGAGGCCG AAACGGTGAA GTCCCTGGGT
ATGGAGCTGG TGGTGACCGA CCATCACGAA CCCAGCGAGA ACGTTCCCGA AGGCATCATC
GTCGTCGACC CGAAGTGCTG CGAGGATAAT CCCAGCAGCA TCCTGGCCGG CGTCGGCGTG
GCGCTCAAGC TGGTCCAGGT CCTGGGCGCC CGCTTCGGTG AGCCGTACCT GTGGCGCCAA
TACACCGATC TGGCAACACT GGGTACCGTG GCCGACCTCA TGCCGCTGAG GGATGAGAAC
CGCGCCCTGG TGGCCGACGG CCTGAGGCAG ATCAATACCA ACCCGCGCCC CTGCATCGCG
GCGCTCATCG GCGTATGCAA CGTGGCGGAC AAGGAGCTCA CGTCCACCAA CCTGTCCTTC
TCCCTCATTC CACGGTTGAA CGCGGCCGGA CGCATGGGGG ATGCCGGTTT GGCGGCGAAA
CTCCTGATGG AAGACGATTT CGGCGAAGCC CAGAAGCTCG CGGCCGAACT GGACGCCGTC
AACGACCAGC GTCGCTCCAT CGAGGCGGAC CTGGCCGCCG TGGCAAAGGA GCAGGCCGAG
AAGATCTACG ACGGGCAGCG CGCGCTGGTG GTCGCAGGCG AAGGTTGGCA TGAGGGCGTG
AAGGGTATCG TCGCATCGCG CCTGGTCAAT ACCTATGGCG TTCCGTCTAT TCTCTTCACC
ATCACCGGCG ACGAGGCGCG CGGCAGCGGC CGCAGCGTCG GCCAGGTGAA CCTGTTCAAG
GCCGTCGAGT CGCTGTCTGA CATGCTCGTC CGCTTCGGAG GGCATGCTGC TGCGGTGGGC
GTGACCGTTC CCACCGACAG GCTCCCAGAA TTCAACGAGC GCCTGTGCGC CTACATGGAT
TCGCTGCCGG AAAGCAGCTT CCATCCCCTG ATCACCATCG ACACGCCGGT CGATTTGGAC
GAGCTCACCA TCGAGAACGT GGAACAGCTC GAGCGGCTTG CCCCCTTCGG GCAGGAGAAC
CCGACGCCCA GGCTTTTGGC CCGCAACGTG CGCATCGTCA ACGCCCGGGC CGTGGGCGCG
GCGAAAAACC ATCTGTCCTG CTCGTTGACG GACGGCGTTT CCCGCGTGGA CGGCATCATG
TTCCACTGCG AAGGCATCGA GGGGCTCATG GCCTGCGGCG GCGTGGTCGA CGCCGTGTTC
GAGGTGGAAA TAGACGAATG GCGTGGCCGC CGCAAGGTGA AGTGCATGCT CAAGGCCGTC
GAGCCAACGG CGACGTGCCC GGCCCTGTCC GCCTGCCTGC CCTCCGACGA CCTTGAGTTC
ATCGGCGAGA TGTATGATGA ATGGGACGGC GGCCAAGACG ATGACGACGA CGGGTTCGAT
CCGCTGTCGC CCGAGGCCAA ACAGCTCTGG ATCACCGAAG CCACCGGCGA TGGCAGCACG
TTGGAGGATG CCATCATCGC GTCGCTCATC GGCGACGCGA GCAAGCTGCA TGCCGCTCAG
CGTGCGGCGC TGCAGTCGCT GGACGCCAAA AAGAACACCT TGGTCGTCAT GGGTACGGGC
CGGGGCAAGT CCCTCATCTT CCAGACGAAG GCGGCGCACC TCGCTTTGAA CGAGCATGCG
GCCAGCCTGT TCGTGTACCC GCTGCGCGCC CTGATCGACG ACCAGTGGTA CCTGATGAAG
GAGCTGTTCG AACCCTTCGG GCTGGAGGTG GCCTCGCTTA CGGGCGAAAC CTCCGCCGAC
GAGCGCCAGC GCGTGTACCG AGGTCTGGCC GACGGCACCA TCGACGTGGT TCTGACCACA
CCCGAATACG CCGTCTACCA CATCGATGAC ATCGCCGCCA GCGGCCGCAT CAAGCTGATG
GTGGTGGACG AGGCCCACCA CATGGCCGAA ATGGGAACCC GTAAGCGCGC GGCATACGGC
GCCATGGGCA CGCTGGCCGA AAAGCTCGGC AACCCGACGG TGCTGGCGCT TACCGCCACG
GGCCCCACGA AGGTTGCCAA CATAACCGAC AGCATCCTTG GCATCGAGCA GCACGTGCTG
GACGACACCA TCCGGCCCAA CCTGCAGATG GACGACCGCC GCAACCTGCG CGACAAGGAC
AGCTATCTGG CGGGTATCGT CGCGACCGGC GAGAAAACCA TCATCTACGT CAACTCCCGC
ATGGGGACGG TGGATCTGGC CCGTACGCTG CGGACCATGG TTCCCCAGGT CGCCATGCAG
ATCGGCTTCT ACAACGCCGG CATGTCCCGC GACGAGCGCG AACGCATCGG ACAGCTCTTC
CGCGACGACG TGCTCAAAGT GCTCGTGTGC ACGTCGGCCT TCGGCGAAGG CGTCAACATC
CCCGACGTGC GCCACGTGGT GCTGTACGGA ATGCCCTTCT CGGAAATCGA GTTCAACCAG
ATGAGCGGCC GCGCCGGCCG CGACGGCACC GAAGCCACCA TCCATCTGCT GTTCGGTCGC
CGCGATGCGG AGGTGTGCGA ACGCATCCTG CGGACCGCCG CACCGTCCCA CGACGACATG
GCCCAGATCT ACCGAACGCT TCGGCACATG CAGTCGGAAC GGCCCGATGA TGCGTTCTTC
CCCATGGACG ACGTGGAGCT CGCCTCGGCC TGCGGACGCT CCACCATCAC TCCCGAATCC
TGCGCCGCCG GCATCGCCGT TTTCTCAGAG CTCGGCCTGG TCGAGGTCCG CGAGGCGTCG
GAGGATGCTC CTCGCCAGAT TCGCGTTCCG AACGCCAAAA GCAGGGTGGA ATTGACCGAT
AGTGTATATT ATCGTGAAGG GATTGAAGAA CTAGACGCTT TTACGCGGTT CAAGGACTGG
GCCCTTCGTA GTACAGCCGA TATGTTGCGT TCGCATATGA TCACGCCCAT CCTGCCGCAT
GGTGAATAA
 
Protein sequence
MTAQFEIRGA EPSAVAAIQQ EFGLPRFVAA TMVAHGVKTL EEARHFLNPD LDEDWRNPYD 
IPQMKEAADR VEAAIRNNET ILVFGDFDLD GISATTVLTR GLRSLGADAH WLIPRRFEEG
YGLSDAAIAR AQTECDPDLI ITVDCGISCK DEAETVKSLG MELVVTDHHE PSENVPEGII
VVDPKCCEDN PSSILAGVGV ALKLVQVLGA RFGEPYLWRQ YTDLATLGTV ADLMPLRDEN
RALVADGLRQ INTNPRPCIA ALIGVCNVAD KELTSTNLSF SLIPRLNAAG RMGDAGLAAK
LLMEDDFGEA QKLAAELDAV NDQRRSIEAD LAAVAKEQAE KIYDGQRALV VAGEGWHEGV
KGIVASRLVN TYGVPSILFT ITGDEARGSG RSVGQVNLFK AVESLSDMLV RFGGHAAAVG
VTVPTDRLPE FNERLCAYMD SLPESSFHPL ITIDTPVDLD ELTIENVEQL ERLAPFGQEN
PTPRLLARNV RIVNARAVGA AKNHLSCSLT DGVSRVDGIM FHCEGIEGLM ACGGVVDAVF
EVEIDEWRGR RKVKCMLKAV EPTATCPALS ACLPSDDLEF IGEMYDEWDG GQDDDDDGFD
PLSPEAKQLW ITEATGDGST LEDAIIASLI GDASKLHAAQ RAALQSLDAK KNTLVVMGTG
RGKSLIFQTK AAHLALNEHA ASLFVYPLRA LIDDQWYLMK ELFEPFGLEV ASLTGETSAD
ERQRVYRGLA DGTIDVVLTT PEYAVYHIDD IAASGRIKLM VVDEAHHMAE MGTRKRAAYG
AMGTLAEKLG NPTVLALTAT GPTKVANITD SILGIEQHVL DDTIRPNLQM DDRRNLRDKD
SYLAGIVATG EKTIIYVNSR MGTVDLARTL RTMVPQVAMQ IGFYNAGMSR DERERIGQLF
RDDVLKVLVC TSAFGEGVNI PDVRHVVLYG MPFSEIEFNQ MSGRAGRDGT EATIHLLFGR
RDAEVCERIL RTAAPSHDDM AQIYRTLRHM QSERPDDAFF PMDDVELASA CGRSTITPES
CAAGIAVFSE LGLVEVREAS EDAPRQIRVP NAKSRVELTD SVYYREGIEE LDAFTRFKDW
ALRSTADMLR SHMITPILPH GE