| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_19710 |
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| Symbol | |
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| ID | 8395860 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | - |
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| Start bp | 2205629 |
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| End bp | 2206579 |
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| Gene Length | 951 bp |
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| Protein Length | 316 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 644986722 |
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| Product | DNA-directed RNA polymerase subunit alpha |
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| Protein accession | YP_003144334 |
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| Protein GI | 257064662 |
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| COG category | [K] Transcription |
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| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
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| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00120516 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.467008 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCAGAGT TCATGAGGCC AACCGTCACA ACTGAAGAAG TGAGCGATAC CGACGCTCGT
TTCGTTGTGG AGCCGCTCGA GCGTGGTTTC GGCTATACGC TGGGCAACTG CATGCGTCGC
GTTCTGCTGT CCTCCCTGGA CGGCGCCCGC GCGACCGCCA TCCAGATTGA AGGCGTGCAG
CACGAGTTCA CGACCGCTGA AGGCGTCATC GAGGATGTCA CCGACATCGT CCTGAACGTC
AAGGGTCTTG TTTTCGCCGC TCTCACCGAG GACTACACTG AAGCAACCGC AACTATCTCC
GTCGAGGGTC CCTGCACGGT GACCGGCGCC GACATCCAGG TGCCCACCGA GTTCACCCTC
ATCAACCCGG AGCATGTCAT CGCGACCGTT GCTGACGGCG GAACTCTCAA CATGAGCATC
CGTATTGGTG TTGGCCGCGG CTACGTCTCC GCCGAGCGCA ACAAGCGCAC GGAAGACCCG
ATCGGCATCA TTCCTGTCGA CAGCCTGTTC TCGCCGGTTC GTCGTTGCAC GCTCGCCGTC
AACGACACCC GCGTGGGTCA GCGTACCGAC TTCGATCAGC TGCTGCTGGA AGTCGAGACC
GATGGCTCCA TCGCTCCGAA CGAAGCAGTC TGCCGTGCAG CTAACATCAT TAACCAGTAC
ATGGGTGCTT TCCTGACCCT GGCTGACATC ACCGACGAGG ACGAGGGCGA CATCCCCTCC
ATCTTCGCCA CCGAAGGCCA GGAGTCCAAC GCTGAGCTTG ACAAGCAGAT CGAGGATCTG
GACCTTTCCG TCCGCTCCTA CAACTGCCTC AAGCGCGCCG GCATCCATTC TGTGCGCCAG
CTGGTCGAGT TCTCCGAGAA CGACCTGCTC AACATTCGTA ACTTTGGCGC GAAGTCCATC
GAGGAGGTCA AGGACAAGCT GATCTCCATG GACCTCAACT TGAAGCAATA G
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| Protein sequence | MAEFMRPTVT TEEVSDTDAR FVVEPLERGF GYTLGNCMRR VLLSSLDGAR ATAIQIEGVQ
HEFTTAEGVI EDVTDIVLNV KGLVFAALTE DYTEATATIS VEGPCTVTGA DIQVPTEFTL
INPEHVIATV ADGGTLNMSI RIGVGRGYVS AERNKRTEDP IGIIPVDSLF SPVRRCTLAV
NDTRVGQRTD FDQLLLEVET DGSIAPNEAV CRAANIINQY MGAFLTLADI TDEDEGDIPS
IFATEGQESN AELDKQIEDL DLSVRSYNCL KRAGIHSVRQ LVEFSENDLL NIRNFGAKSI
EEVKDKLISM DLNLKQ
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