Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_19540 |
Symbol | |
ID | 8395843 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | - |
Start bp | 2188446 |
End bp | 2189105 |
Gene Length | 660 bp |
Protein Length | 219 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 644986705 |
Product | predicted cobalamin binding protein |
Protein accession | YP_003144318 |
Protein GI | 257064646 |
COG category | [R] General function prediction only |
COG ID | [COG5012] Predicted cobalamin binding protein |
TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain [TIGR02370] methyltransferase cognate corrinoid proteins, Methanosarcina family |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.109769 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00000629767 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGTGGCCG CAAGCAAAGA AGAGCTGATT CAGAAAATGT ACGACTGCGT CGTCGAGATG GAGGACGAAG AGGTCGTCGA TGTGTGCAAC GAATACCTGG AAGCCGGCTA CGATGCCTAC GATGGCATCA TGGAAGGCCT GGTCGCAGGT ATGAACAGGG CTAGTGAGCT GTACGACGAG GAGGAATACT TCGTTACCGA CGTGCTGCTG TGCTCGGACG CGCTGTATGC GGGCCTCGAC GTCCTGCGTC CGCACCTGAA GTCTGAAGAG GCTGACGGTC AGCGCAAGAA GGTGGTCATC GGCGTGGTCG AAGGCGACAC ACATGACATC GGCAAGAACC TGGTCAAGAT CATGCTGGAA ACCGCTGGCT TCGAAATCTA CGACCTGGGC CGCGACGTTC CGCTGGACGA TTTCGTCACC AAGGCCAAGG AGGTCGACGC CGACATTATT GCCATGTCCA CCCTCATGAC GACCACCATG GGCGGCATGG GTGAGGTCGT GAAGAAACTG GAAGAGGCCG GCATCCGCGA CAAGGTGAAG GTCATGGTCG GCGGAAGCCC CGTTTCCCGC AGGTTCGCAG ACGAAATCGG TGCGGAAGGA TACTCCCGCA ACGCCGTCGA GGCCGTCAAG ATGGCCAAGG AACTGGTCGG CATGGCCTAG
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Protein sequence | MVAASKEELI QKMYDCVVEM EDEEVVDVCN EYLEAGYDAY DGIMEGLVAG MNRASELYDE EEYFVTDVLL CSDALYAGLD VLRPHLKSEE ADGQRKKVVI GVVEGDTHDI GKNLVKIMLE TAGFEIYDLG RDVPLDDFVT KAKEVDADII AMSTLMTTTM GGMGEVVKKL EEAGIRDKVK VMVGGSPVSR RFADEIGAEG YSRNAVEAVK MAKELVGMA
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