Gene Shel_16260 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_16260 
Symbol 
ID8395516 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp1826306 
End bp1828417 
Gene Length2112 bp 
Protein Length703 aa 
Translation table11 
GC content62% 
IMG OID644986380 
Producttranslation elongation factor 2 (EF-2/EF-G) 
Protein accessionYP_003143994 
Protein GI257064322 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0480] Translation elongation factors (GTPases) 
TIGRFAM ID[TIGR00231] small GTP-binding protein domain
[TIGR00484] translation elongation factor EF-G 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000508186 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.782e-05 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCAGATA AGAAAACATC CCTCAAGAAT ACGCGCAACA TCGGCATCAT GGCCCACATC 
GACGCGGGCA AGACGACGAC CACCGAGCGT ATTCTGTATT ACACCGGCAA GACCCATAAG
ATCGGTGAGG TGCATGAGGG CGCTGCAACC ATGGACTGGA TGGTCCAGGA GCAGGAGCGC
GGCGTAACCA TTACGTCCGC CGCTACCACC ACCTTCTGGG AGAAGGATGG CGTCGAGCAC
CGCATCCAGA TCATCGACAC CCCGGGCCAC GTGGACTTCA CGGCCGAGGT CGAGCGCTCC
CTGCGCGTTC TTGACGGCGC CGTCGCCGTC TTCGACGCTG TCGCCGGCGT TCAGCCCCAG
TCCGAAACCG TTTGGCGCCA GGCTCATCGT TACGGCGTTC CCCGCATCGC CTACATCAAC
AAGTACGACC GCGTCGGTTC CGACTTCTTC CATGCTATCG ACACCATGAA GACCCGTCTG
GACGCCCCCG CAGTCGCCGC CCAGATCCCC ATGGGCGCAG AGGACAACTT CTGGGGCCTG
GTGGACCTGG TTACCATGAC CGCCTGGGAC TTCAAGGCTG ACGATAAGGG CATGACCTAT
CCCGAGCAGC TGCCTGAGAT TCCTGCCGAG TTCGTCGAGC AGGCTCAGGA GTACCGCCAG
ATCCTCGTTG ACGCCGCCGC CGACTTCGAC GACGACCTCA TGGAGAAGGT CCTGATGGAC
GAGGAGTTCA CCGTCGAGGA GCTCAAGAAC GCCATCCGCA AGGGCACCAT CGCCTGCGAG
CTGAACCCTG TTTTCGTCGG TTCTTCCTAC AAGAACAAGG GCGTCCAGGA ACTGCTCGAC
GCAGTGTGCG ACTACCTGCC CAGCCCGGTC GACGTGCCCG CCATCAAGGG CACCATCCCC
GGCAAGGACG AGGAAGGCGA GCGCCCCTCC GACGAGAAGG CTCCCTTCGC AGCCTTGGCA
TTCAAGATCA TGACCGACCC CTACGTCGGC AAGCTGACCT ACTTCCGCGT GTACTCCGGC
AAGGTCGAAG CTGGCTCTTA CGTCCTGAAC TCCACGAAGG ACAAGAAGGA GCGCATCGGC
CGCATCCTGG AGATGAACGC CAACGAGCGT ATCGACCGCG ACTACTGCGC CGCCGGTGAC
ATCGTCGCCG CCGTCGGTCT GAAGAACACC ACCACGGGTG ACACGCTGTG CGCCGAGAAC
GCACCCATCA TCCTGGAGTC CATGGAGTTC GCCGACCCGG TTATCGACAT CGCCATCGAG
CCCAAGACCA AGGCTGAGCA GGACAAGATG GGCATCGCCC TTCAGAAGCT CGCCGAAGAG
GACCCGACGT TCCGCGTGTC CACCAACCAT GAGACCGGCC AGACCATCAT CGCCGGCATG
GGCGAGCTGC ACCTGGAGAT CATCGTCGAC CGTCTGCTCC GCGAGTTCAA GGTCGAGGCT
AACGTCGGCA AACCGCAGGT TGCCTACCGC GAGAAGGCCA CCGTGCCTGC TCTCAACGTT
CAGGGCAAGT TCGTCCGCCA GTCCGGCGGC CGCGGCCAGT ACGGCGACTG CGTCATCAAC
ATGTACCCTG CCGAGCCTGG CGAGGGCTAC AAGTTCGAGA ACAAGATCGT CGGCGGCGTT
GTGCCCAAGG AGTACATCCC GTCCATCGAT AAGGGCATCC AGGAGGCTCT GGAGTCCGGC
GTTCTGGCCG GCTTCCCGGT CGAGGACGTC CGCGTCGAGC TCATCGACGG TTCTTACCAT
GACGTCGACT CCTCCGAAGC CGCCTTCAAG GTTGCCGGCT CCATGGCCAT CAAGGCCGCT
CTGCGCAAGG GCCAGCCGGT CATCCTCGAG CCGGTCATGG CTGTCGAGGT CGAGACCCCC
GAAGAGTACA TCGGCTTCGT CATGGGCGAC ATCCCGAGCC GCCGTGGCCT GATCCAGGGC
CAGGAGCAGC GTGGCAACGC CGTCTGCATC AGCGCCAAGG TTCCGCTGAG CAACATGTTC
GGCTACGCCA CCGACCTGCG TTCCGGCACT CAGGGCCGTG CTGTGTACAC CATGCAGTTC
GACTCTTACG AGCCTGTGCC GAAGAGCGTT CAGGAAGAAA TCATCAGCAA GGCTGGCGGA
AGCGCTTCTT AA
 
Protein sequence
MADKKTSLKN TRNIGIMAHI DAGKTTTTER ILYYTGKTHK IGEVHEGAAT MDWMVQEQER 
GVTITSAATT TFWEKDGVEH RIQIIDTPGH VDFTAEVERS LRVLDGAVAV FDAVAGVQPQ
SETVWRQAHR YGVPRIAYIN KYDRVGSDFF HAIDTMKTRL DAPAVAAQIP MGAEDNFWGL
VDLVTMTAWD FKADDKGMTY PEQLPEIPAE FVEQAQEYRQ ILVDAAADFD DDLMEKVLMD
EEFTVEELKN AIRKGTIACE LNPVFVGSSY KNKGVQELLD AVCDYLPSPV DVPAIKGTIP
GKDEEGERPS DEKAPFAALA FKIMTDPYVG KLTYFRVYSG KVEAGSYVLN STKDKKERIG
RILEMNANER IDRDYCAAGD IVAAVGLKNT TTGDTLCAEN APIILESMEF ADPVIDIAIE
PKTKAEQDKM GIALQKLAEE DPTFRVSTNH ETGQTIIAGM GELHLEIIVD RLLREFKVEA
NVGKPQVAYR EKATVPALNV QGKFVRQSGG RGQYGDCVIN MYPAEPGEGY KFENKIVGGV
VPKEYIPSID KGIQEALESG VLAGFPVEDV RVELIDGSYH DVDSSEAAFK VAGSMAIKAA
LRKGQPVILE PVMAVEVETP EEYIGFVMGD IPSRRGLIQG QEQRGNAVCI SAKVPLSNMF
GYATDLRSGT QGRAVYTMQF DSYEPVPKSV QEEIISKAGG SAS