Gene Shel_16210 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_16210 
Symbol 
ID8395511 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp1823311 
End bp1824189 
Gene Length879 bp 
Protein Length292 aa 
Translation table11 
GC content65% 
IMG OID644986375 
Producthydro-lyase, Fe-S type, tartrate/fumarate subfamily 
Protein accessionYP_003143989 
Protein GI257064317 
COG category[C] Energy production and conversion 
COG ID[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain 
TIGRFAM ID[TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.47794e-08 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAATACGT TTAACTTGCT TACCAAAGAG ATGATTGCGC AGGCCGTTTA CGAGGCGATA 
CCGCAGACCG CCTGCGTGCT GCCCGCCGAT GTGCGGGATG CTCTCGTGCG CGCCCGCGGC
CTTGAGGGCC CATCGCGCGG CGCCATCGTT TTAGACCAAC TGCTGGAAAA CGCCGATATC
GCTGAAGCCG ACCGCGTGCC CATCTGTCAG GATACGGGCA CTACGTGGGT ATGTCTAGAG
ATCGGGCCGG ACGTGTTGCT GCCGGGAGAC GCGTTCTCCC TGGTGAACGA TGCTGTGGCT
CGGGCTTATA CGGAGGCCAA CCTGCGCAAG AGCGTCGTCA AGGACGCCCT TGTGGACCGC
AGCAACACCG GCGACAACAC GCCGGCCTTC GTGGACGTGG AGTTCGTGGA CGCCCCCGGC
GCCCGCGTGC ACGTGCTGTT GAAGGGCGGC GGATCCGACA ACGCATCCCG CGTGGTCATG
CTCACCCCTG GCGCCGGCCG TGAAGGCATT GTGCGCGAGG TCATGGACTG CGTCCGCCAC
AAGGCGGCAA ACGCTTGCCC GCCGCTGGTC ATCGGCATCG GCGTGGGCGG CACCTTCGAC
AAGGTGGCCC ACCTGGCGAA AACGGCGCTT CTGCGTCCTG TGGGTTGTGC GAGCGAAAAC
CCCGAGGTGG CAGCATTCGA GCGGGAGCTT CTGGACATGG TCAACGCCAC TGGCATGGGT
CCCGGCGCCT TGGGCGGAAA GACTTTGGCC TTGGACGTCC ACGTGAACAC GGCACCGTGC
CACATCGCGG CCCTGCCGCT TGCCATCAAC ATGGGATGCT CGGCCATGCG CCGCATGACC
ATTGAGCTAG AAACCACGCC GGTGGGAGGG GTCCGATGA
 
Protein sequence
MNTFNLLTKE MIAQAVYEAI PQTACVLPAD VRDALVRARG LEGPSRGAIV LDQLLENADI 
AEADRVPICQ DTGTTWVCLE IGPDVLLPGD AFSLVNDAVA RAYTEANLRK SVVKDALVDR
SNTGDNTPAF VDVEFVDAPG ARVHVLLKGG GSDNASRVVM LTPGAGREGI VREVMDCVRH
KAANACPPLV IGIGVGGTFD KVAHLAKTAL LRPVGCASEN PEVAAFEREL LDMVNATGMG
PGALGGKTLA LDVHVNTAPC HIAALPLAIN MGCSAMRRMT IELETTPVGG VR