Gene Shel_16190 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_16190 
Symbol 
ID8395509 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp1822087 
End bp1822791 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content62% 
IMG OID644986373 
Productthymidylate kinase 
Protein accessionYP_003143987 
Protein GI257064315 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0125] Thymidylate kinase 
TIGRFAM ID[TIGR00041] thymidylate kinase 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.39363e-08 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGACTGACG CGGCTGCACA TACGGGCGTT TTCATCACTT TCGAAGGTGG GGAAGGCGCT 
GGAAAATCTA CCCATATCAA CTTCCTGGCG CAGACTCTCG AGGCCTGCGG CTTCGAGGTG
GTGCGCGTTC GCGAACCCGG CTCGACTCGC ATAGGCGAGC AACTGCGCGG CGTCGTGCTG
GATCCCGAGA ACGCCGAGAT GGCCGATTGG ACCGAGCTTT TCATCTACGA GGCGGCACGC
GCACAGCTGG TGGCCGAAGC CATCAAGCCT GCGCTTGAAC GGGGCGCCAT CGTGCTCTGC
GACCGGTTCA CCGATTCGAC GCTGGCCTAC CAGGGCTATG GTCGGGGATT GGAGCTGGAC
CGTGTTCGAA GGGCGAATGA GCTTGCCTGC CAGGGCATAG TCCCTGATGC CACCGTGCTC
ATGGTGGCTC CGAACGCCTT GGAGGGGCTC TACCGCGCCA CCAAGGATGA CGGCGCCGAC
CGCCTCGAGT CCGCCGGACA TGATTTCCAT GTGCGTGTGA ACCAGGCGTT CGTCGAGCTT
GCCGCCCAAA GCAAGAAGCG CATCCGCATG GTTCAGTCCG CCAGTGCGAA ATCCCTCACG
TCCCAGTCGG TCTTCAAGGC CCTGGCAGAT GTCCTGCCCC AGCTGGAGCG GTTCATCGGC
AACGAGGATC ATTTCGCATC CTTAGACGTG AAGAAGGTCG ACTGA
 
Protein sequence
MTDAAAHTGV FITFEGGEGA GKSTHINFLA QTLEACGFEV VRVREPGSTR IGEQLRGVVL 
DPENAEMADW TELFIYEAAR AQLVAEAIKP ALERGAIVLC DRFTDSTLAY QGYGRGLELD
RVRRANELAC QGIVPDATVL MVAPNALEGL YRATKDDGAD RLESAGHDFH VRVNQAFVEL
AAQSKKRIRM VQSASAKSLT SQSVFKALAD VLPQLERFIG NEDHFASLDV KKVD