Gene Shel_16170 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_16170 
Symbol 
ID8395507 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp1819471 
End bp1820973 
Gene Length1503 bp 
Protein Length500 aa 
Translation table11 
GC content62% 
IMG OID644986371 
Productuncharacterized PSP1-like protein 
Protein accessionYP_003143985 
Protein GI257064313 
COG category[S] Function unknown 
COG ID[COG1774] Uncharacterized homolog of PSP1 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value2.03324e-08 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGCCTAAGG TCGCACCGGT CCGGTTGACC TACAATCCGA AGATACTGTG GTTCGACCCG 
GTTGACATAG ATATCCACGC AGGCGACAAG CTTATTGTGA GCACCGAGCG CGGCACCGAA
TTCGGCACTG CCGACAGCGA TCTGAAAGAG GTCCCCGAGG AGGCCATCGA AGCGCTGGAC
AGTCCGCTGA AGCCCGTGCT GCGCATCGCC ACCGAGGAAG ACGAAGCCCA CTGGGAAGAG
CAGATGCGTC TTGCTGAAGC CGCCGTCCCC GTTTTCAAGC GCATGGTGGA GGAGCAGGGT
CTGGATATGC GCCCCGTCAC GGTCGAGTAC TTGTTCGACG GCGACAAGGG CATCTTCTAC
TTCGAATCCG AAGAGCGTGT GGACTTCCGC AACCTGGTCC GCTCGCTGGC GTCCGAATTC
CACATCCGCG TTGATATGCG CCAGATCGGC GTCCGCGACG AGGCTCGCAT CGTGGGTGGC
TACGGCCACT GCGGCCAGGA GCTGTGCTGC GCGCGCATGG GCGGTAAATT CAATCCCGTC
ACCATCCGCA TGGCCAAGGA TCAGGACCTG TCGCTGAACC CGCAGAAGAT CTCCGGTGTT
TGCGGTCGCC TCATGTGCTG TTTGCGCTAC GAGTCGGATG TCTACAAGGA GTTCAAGACG
GGGTGTCCCA AGCTGAATGC CAAGGTCGAT ACGCCGGAAG GCGAGGCCAA GGTGGTCGAA
GTGAACGTTC CGCGTGAGAC GGTGACCATT TTGACCTCGG ACAACAAGCG CATCCGCGTA
CCTGTCGCCG ACATGACCGT GGAACGCGAG AACAATCCCA ACGGCAAGCC GGACACGGTT
CCCGAGGACG TCTACTTCGA GTGCAAGGAC GCCAACAACG CGGCCAAGAC CACGGCGCTT
CTGGTGGACA AGCTCTTCAC CGGAAACGAC AAGGTGGCTG AGAATCCGCG TGCGGTGCAC
AATCCTTCCC GCAGGCGCGC AGACGGTGCT GCCAAGGAAG GCGAGGGCGC ATCGAAGCGT
TCGCGCAGGC GCCGGAGCCG CTCCAAGAAC GGATCGGACG CCCAGGCGGG CCAGCCCAAG
CAGCAGCAGG CGAAGCAGCC CAAGAAGGCC AAGGGCCAGC AGGACAAGAA CGCCCAGCAG
AAAACTGCCA AGGAACAGCA GCAGGCCAAG TCCCAGCGCA CCAACCAGAA GCCGCGCCGC
AGGCATGTGA CGACGGGCGG CGCTGCAGGT GCGGGCGCAT CCGCGGAAAA GCAGCCGCAG
CAGGCCCAAC AGCAGAAGCA GCAGAAGCCC CAGAAACAGC AGTCGAACCG CAAGCCGCGT
CCGCAGAAGC AGAACACAGG CGCCCGTCCG GGCCAGCGTT CTTCTGGATT GGCGGAGACA
CGTTCCGGGC AGGGGACATC CAACCATCAA TCAAACAACG GCGCCGCCGG TGAGCACCGT
CGCACCCGCA GGCGCAGCCA TAAAGCACAG GGTTCCGAAG GACAACAACA ACAGGAAAAC
TAA
 
Protein sequence
MPKVAPVRLT YNPKILWFDP VDIDIHAGDK LIVSTERGTE FGTADSDLKE VPEEAIEALD 
SPLKPVLRIA TEEDEAHWEE QMRLAEAAVP VFKRMVEEQG LDMRPVTVEY LFDGDKGIFY
FESEERVDFR NLVRSLASEF HIRVDMRQIG VRDEARIVGG YGHCGQELCC ARMGGKFNPV
TIRMAKDQDL SLNPQKISGV CGRLMCCLRY ESDVYKEFKT GCPKLNAKVD TPEGEAKVVE
VNVPRETVTI LTSDNKRIRV PVADMTVERE NNPNGKPDTV PEDVYFECKD ANNAAKTTAL
LVDKLFTGND KVAENPRAVH NPSRRRADGA AKEGEGASKR SRRRRSRSKN GSDAQAGQPK
QQQAKQPKKA KGQQDKNAQQ KTAKEQQQAK SQRTNQKPRR RHVTTGGAAG AGASAEKQPQ
QAQQQKQQKP QKQQSNRKPR PQKQNTGARP GQRSSGLAET RSGQGTSNHQ SNNGAAGEHR
RTRRRSHKAQ GSEGQQQQEN