Gene Shel_15200 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_15200 
Symbol 
ID8395410 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp1743672 
End bp1744265 
Gene Length594 bp 
Protein Length197 aa 
Translation table11 
GC content55% 
IMG OID644986274 
Producttranslation initiation factor 3 
Protein accessionYP_003143889 
Protein GI257064217 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0290] Translation initiation factor 3 (IF-3) 
TIGRFAM ID[TIGR00168] translation initiation factor IF-3 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000028162 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0802518 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGTTCTGA TTGCAGAAAT GCAAAAGGAG GTGGGCGCAA TAGCAGCTCA AGAGCCCAGG 
CTCAACGACG AGATCAACGT TCGTGAGTGC CGTCTGATCG GATACGATGG AACGCAGATG
GGTATCTACG ATGTGCGTGA AGCGCTTCGT ATTGCTGAGA ACCAGCAGCT CGACCTGGTC
GAGATCGCCC CGAATGCGAA TCCGCCCGTG TGCCGTATCA TGGACTACGG GAAGTTCAAG
TACGACCAGG CCATCAAGGC CAAGCAGGCG CGCAAGAAGC AGACGAAGGT CGAAATCAAG
GAGATGAAGT TCCGTCCGAA GATCGACATC GGGGACTACA CCACCAAGAA GAAGCACATC
ATCCGCTTCC TTCAGGACGG TGCCAAGGTG AAGATCACCA TCATGTTCCG CGGTCGTGAA
ATGGCCCACC CCGACCAGGG TCTGTCCATT CTCGAGCGTC TGGCTGATGA TCTCAAAGAC
GTCGCAGTCG TCGAGAACCA GCCCAAGATG GAAGGCCGTA ACATGCACAT GCTTATCGCG
CCTCTGCCTT CCACGGTCAA GAAGACCGCC AAGGCCAATA AAGAAGAGAA GTAA
 
Protein sequence
MVLIAEMQKE VGAIAAQEPR LNDEINVREC RLIGYDGTQM GIYDVREALR IAENQQLDLV 
EIAPNANPPV CRIMDYGKFK YDQAIKAKQA RKKQTKVEIK EMKFRPKIDI GDYTTKKKHI
IRFLQDGAKV KITIMFRGRE MAHPDQGLSI LERLADDLKD VAVVENQPKM EGRNMHMLIA
PLPSTVKKTA KANKEEK