Gene Shel_12890 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_12890 
Symbol 
ID8395180 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp1479597 
End bp1480136 
Gene Length540 bp 
Protein Length179 aa 
Translation table11 
GC content56% 
IMG OID644986045 
Productrubrerythrin 
Protein accessionYP_003143665 
Protein GI257063993 
COG category[C] Energy production and conversion 
COG ID[COG1592] Rubrerythrin 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.199021 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCTCA AAGGTTCTAA AACCGAGAAA AACCTGATGT ATGCATTCGC AGGTGAGGCG 
CAGGCCCACA CTAAGTATCA GTATTACGCA TCCCAGGCCA AGAAGGACGG ATATGTCCAG
ATCCAGAACA TCTTCCTGGA AACGGCCAAG AACGAGAAAG AGCACGCCAA GCTGTGGTTC
AAAGCACTTC ACGGGGGCGT CGTCCCCAGC ACCCTTGAGA ATCTGGAGGA CGCCGCCAAC
GGTGAACATG AGGAATGGAC CGACATGTAC GCCGAGTTCG CAGCCACTGC CCGCGAAGAA
GGGTTCGAGG ATCTGGCCGA GCTGTTCGAC GGCGTTGCCG GTGTTGAGAA GGAACACGAG
GAGCGTTACC GCAAGCTGAT CGAGCGCATC AACAACGGTG AAGTGTTCAA GCGTGGCGAA
GTGTACGCGT GGAAGTGCAA CAACTGCGGG CACATCCACA TCGGCACCGA GCCGCCGGAA
GTGTGCCCCG TATGCAACCA TCCCCAGGCG CACTTCGAGA TTCGTTCCGA GAATTATTAA
 
Protein sequence
MDLKGSKTEK NLMYAFAGEA QAHTKYQYYA SQAKKDGYVQ IQNIFLETAK NEKEHAKLWF 
KALHGGVVPS TLENLEDAAN GEHEEWTDMY AEFAATAREE GFEDLAELFD GVAGVEKEHE
ERYRKLIERI NNGEVFKRGE VYAWKCNNCG HIHIGTEPPE VCPVCNHPQA HFEIRSENY