| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_11580 |
|---|
| Symbol | |
|---|
| ID | 8395049 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Slackia heliotrinireducens DSM 20476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013165 |
|---|
| Strand | + |
|---|
| Start bp | 1333145 |
|---|
| End bp | 1334692 |
|---|
| Gene Length | 1548 bp |
|---|
| Protein Length | 515 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 644985915 |
|---|
| Product | response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| Protein accession | YP_003143541 |
|---|
| Protein GI | 257063869 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.937657 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAGCC TGAAAGAACA ACGTGCACAA ACCCATGACC GCAAGATGCT GATCTATGCG
GTCATCGGTT TCGGCTGCAT GATCGCCTAC AGCCGCATGC TTGGCGAAGG GTTCGAAGGT
TACATGCAAA TCGGCTCCAC CACGCCGCAA GACACGTTCT ATCTGCTGCG TTCTTTCGCT
CGTCTGTTCA CCATCGCGGT CATCGCCATC GGCGGATACC GCAACACCCT GCGCATCAAC
GGCATCGCCG TCGTCGCAGC GGGCGTGCTC ATGACGTTCT CGACGGCCAT CTTCACCTTC
TCGGGCAACG GCTCGCTGGG CGCCCTTGTG GCCCTGATGG CCGGCGCGTC CAACGGCATT
CTGCTGTACG CGTGGATGCT GCTTCTGTCC AGCTACGACA TGAAGCGCAT CATGGAGGTG
ACGCTTTCCG GCCTGGTGCT GGCGGGCGCC ATCCTCATGG GCGGTCCCTA TCTGCCCACG
GCGCCGCAGA TGGCCGTGGT CATCCTTTCG GCCTTGCTGT CGTCGTTCAG CATGCTGGCG
GTGGATCCCG ATTTCGAATC GTGCATCCCC GACGGCAGGC TCACCCGCGC CGACCTGCGC
CAGATCCCGT GGTTCACCCT CATCATGATC ATCGTGTGCG GCTCCATCGG CACGGTGCTG
TACGGCATGT CCCTCGAGTT CTTCTGGTCC TTCAGCGACG GCGCCAACTA CATCGTGTTC
GGCATTTCCA TCCTGTTGAC CATCGGCGCG TCGTGCCTGA TCATGCTGCG CACCAAGCTC
TGGGCCGACC GCGTGTGGCT GCCTACGTTC GTGCTGCTCA TGTGCTCGCT GTGCAGCTGC
TTCCTCGTGG CCGAGAGCGT CATGCCCCTG TGCATGGGCT TCCTTCTGGC CTCCATGTTC
TGCTACCACT TCCTGCATTG GATGATTTTC CCGGCCATCT TCCACGAGAT CAAAGTGCCG
CGCCACATGA TCGTCGGCGT TGTGCTGGTG CTCACCAACA GCTTTTTGGT GTCGCACCTG
GGCGGCATCA CCGCCCGCGC CCTGCCCGAG AGCATCAGCA GTCTGAGCAG CGTGGCGGGC
CTTATGGCCG TGGGCATGAT CATCCTGTTC GCCGTTTCGT GGGGCTTCAT GGGCCGCACC
TCCAATCATG GCGAGGCCGA GCGCATCGAG CGCATCGCTG TCGAGTCCTT CGAACAGCTG
AAGAGCGAAA ACCCCGAGCT CGCGCAGCAG ATGGAGGTGG CCGAAGCCGA GCAGACCGCA
GCCGTAGCCC AGCCCGAACC CGAGCCTGAA CCCGAGCCCG AGCCCGAACC CGCGCCTGCC
CCGATGACCA TCGAGGAGCG CTTCGAACAG ATCGGCAAAC AGTACGGCCT GACGGCCCGT
GAGAAAGAGA TAGCGGCCCT GACCGCGCAG GGCTTCTCGT CCACCTACAT CGCCGAGAAG
CTCGTGGTGT CCGCCAGCAC GGTGCGCTTC CATCAGCAGA ACGTCTATCG CAAGCTGGAC
ATCCACTCCC GCACCGAGCT CATCGAAATC GCCAACGCCC AAGAATAA
|
|---|
| Protein sequence | MQSLKEQRAQ THDRKMLIYA VIGFGCMIAY SRMLGEGFEG YMQIGSTTPQ DTFYLLRSFA
RLFTIAVIAI GGYRNTLRIN GIAVVAAGVL MTFSTAIFTF SGNGSLGALV ALMAGASNGI
LLYAWMLLLS SYDMKRIMEV TLSGLVLAGA ILMGGPYLPT APQMAVVILS ALLSSFSMLA
VDPDFESCIP DGRLTRADLR QIPWFTLIMI IVCGSIGTVL YGMSLEFFWS FSDGANYIVF
GISILLTIGA SCLIMLRTKL WADRVWLPTF VLLMCSLCSC FLVAESVMPL CMGFLLASMF
CYHFLHWMIF PAIFHEIKVP RHMIVGVVLV LTNSFLVSHL GGITARALPE SISSLSSVAG
LMAVGMIILF AVSWGFMGRT SNHGEAERIE RIAVESFEQL KSENPELAQQ MEVAEAEQTA
AVAQPEPEPE PEPEPEPAPA PMTIEERFEQ IGKQYGLTAR EKEIAALTAQ GFSSTYIAEK
LVVSASTVRF HQQNVYRKLD IHSRTELIEI ANAQE
|
|---|
| |