| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_10960 |
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| Symbol | |
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| ID | 8394987 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | + |
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| Start bp | 1250986 |
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| End bp | 1253217 |
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| Gene Length | 2232 bp |
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| Protein Length | 743 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644985854 |
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| Product | polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| Protein accession | YP_003143480 |
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| Protein GI | 257063808 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000522629 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.00000000397306 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGGAAAAAG TTTCTTTGGC CTTCGAACTG TACGGCAAGG AGTACGCCTT CGAAACGGGC
GAGCTGGCCA AGCAGGCCAC AGGTGCCGTC CTGGTCAAGC AGGGCGAAAC CACCGTTCTG
GTCACCGCTG TCATCTCGGC CCAGGAAAAG GACTACGACT TCTTCCCGCT GACGGTCGAC
TTCATGGAGA AAATGTACGC CGTGGGCCGC ATCCCCGGCG GCTACCTGAA GCGCGAAGGC
AAAGCATCTG ACAAGGGCAC GCTGACGGCT CGCATGATCG ACCGCCCGAT CCGCCCCGGC
TTCGCCGACG GCTTCAAACA GGAAGTCCAC GTCGTGGCCA CCACCTTCGC CATCGACGGC
CAGAACCCGC CCGACTGCAT CTGCGTCGGC GGCGCCAGCG CAGCCCTCAT GATCGGCTCC
GCTCCCTTCG ACGGCCCGGC TGCTTGCGTG CGCATCGCCC GCAACGCCGA AACCAAGGAG
TTCATCGTCA ACCCGACGTA CGAAGAGCAG GAGACCTCCG ACCTCGAGCT GACCATCGCA
GGCACCCGTG ATTACATCTC CATGGTGGAG GCCGGCGCCA ACGAGGTCAC CGAAGAGGAC
ATGCTCGCTG CCATGAACTT CGGCCAGGAG GCCATCGCGG CCTTCTGCGA GAAGCAGGCC
GAATTCCTGG CCATGGTGGC TCCCGAGCCC CGCGAATGGC CCATCCATGT GCCCGACGCC
TCCATCGCCG AGCGCGTCGA CGCCCACTTC GACGAAATGT CCGCAGCCCT CAAGGATGCC
GACAAGCAGT CCCGCATCGC CAAGGTCGAG GAGCTGAAGG CCGCCATCAA GGCCAACGAC
TTCTCCGAGG AGGAGCAGGC CGCTTGGGGT TCCGACATCG CCGCGGCCCT CAAGTCCCTT
GAGAAGCATG CCATGCGCCG CATGGTCATC GAGACCGGCG AACGTGCCGA CGGCCGCGCG
GCCGACGAGA TCCGTCCGCT GTACATCCGT CCCGGCTATC TGCCCCGCGT CCACGGCTCC
GGCCTGTTCC AGCGCGGCCA GACCCAGGCC CTGTCCGTGT GCACCTTGGG CCTTCTCAAC
GAGGCCCAGC GTCTGGACAC CATCGACCCG GCCACGGGCA AGCGCTACAT GCATCAGTAC
AACTTCCCGC CGTACTGCAC CGGCGAAGTC GGCCGCATGG GCGCCCCCAA GCGCCGCGAG
GTCGGCCACG GTGCGCTGGC AGAGCGCGCC ATCCTGCCCG TGCTGCCTTC CGAGGACGAG
TTCCCTTACG CCATCCGCGT GGTCTCCGAG ATCCTCGAGT CCAACGGCTC TTCCTCCATG
GCATCCACCT GCGGTTCCTG CCTGGCCCTC ATGGACGCCG GCGTGCCCAT CAAGGCGCCC
GTCTCCGGCA TCGCCATGGG CCTGATCAAG GAGGAGGACG GCGTGGTCAT CCTGTCCGAC
ATCCAGGGTC TTGAGGACTT CCTGGGCGAC ATGGACTTCA AGGTGACCGG CACCGCCAAC
GGCATCACGG CGCTCCAGAT GGACAACAAG GCCCGCGGCC TGTCCACCGA GATCCTGGGC
CGTGCGCTGC AGCAGGCCAA GGAGGGCCGT GCCCACATCC TGAACGCCAT GCTGGCCGAG
ATCCCCGGTC CTCGCGAGGA GCTGCGTGAC ACCGCGCCCC GCATCGAGAC CATCCACATC
CCCGTGGACA AGATCCGCGA GGTCATCGGC AAGGGTGGCG AAACCATCCG CGGCATCCAG
GATTCCACGG GTGCTTCCAT CGAGATCCAG GAAGACGGCA CCGTGCACAT CGCCTCCGTC
GACCAGGAGG CCGGCCGCGC CGCCAAGGCC GCAGTCGAGG CCATCGTCAA GGAGCCCGAG
GTGGGCGAGG TGTACGAAGG CACCGTTGTC GGCATCCAGA CCTTCGGCGC GTTCGTCAAG
CTGACGCCAT CCAAGGACGG CCTGCTCCAC ATCAGCCGCA TGGCCAACGG CCGCGTCAGC
AAGGTGGAAG ACGTCCTGAA CATGGGCGAC ACCGTGAAGG TCCAGGTTAT CGAAATCGAT
CCGAAGAGCG GCAAGGTTTC TTTGGACCGT CTTGAGAAGC CGGATGCGCC GGAAGGCTCC
GAGCCCGCTC ACAACGGCCG CGAGGAGCGC GGCAACGGCC GCGATCGCCG TCCCGGCCGC
GGCAACCGCA ACAACGGCAA CGAGGACCGC GGCGGAGACA ACCGCAAGCC CCGTCGTCGC
CACCAGCAGT AA
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| Protein sequence | MEKVSLAFEL YGKEYAFETG ELAKQATGAV LVKQGETTVL VTAVISAQEK DYDFFPLTVD
FMEKMYAVGR IPGGYLKREG KASDKGTLTA RMIDRPIRPG FADGFKQEVH VVATTFAIDG
QNPPDCICVG GASAALMIGS APFDGPAACV RIARNAETKE FIVNPTYEEQ ETSDLELTIA
GTRDYISMVE AGANEVTEED MLAAMNFGQE AIAAFCEKQA EFLAMVAPEP REWPIHVPDA
SIAERVDAHF DEMSAALKDA DKQSRIAKVE ELKAAIKAND FSEEEQAAWG SDIAAALKSL
EKHAMRRMVI ETGERADGRA ADEIRPLYIR PGYLPRVHGS GLFQRGQTQA LSVCTLGLLN
EAQRLDTIDP ATGKRYMHQY NFPPYCTGEV GRMGAPKRRE VGHGALAERA ILPVLPSEDE
FPYAIRVVSE ILESNGSSSM ASTCGSCLAL MDAGVPIKAP VSGIAMGLIK EEDGVVILSD
IQGLEDFLGD MDFKVTGTAN GITALQMDNK ARGLSTEILG RALQQAKEGR AHILNAMLAE
IPGPREELRD TAPRIETIHI PVDKIREVIG KGGETIRGIQ DSTGASIEIQ EDGTVHIASV
DQEAGRAAKA AVEAIVKEPE VGEVYEGTVV GIQTFGAFVK LTPSKDGLLH ISRMANGRVS
KVEDVLNMGD TVKVQVIEID PKSGKVSLDR LEKPDAPEGS EPAHNGREER GNGRDRRPGR
GNRNNGNEDR GGDNRKPRRR HQQ
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