Gene Shel_10700 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_10700 
Symbol 
ID8394961 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp1223971 
End bp1225311 
Gene Length1341 bp 
Protein Length446 aa 
Translation table11 
GC content62% 
IMG OID644985828 
ProductMiaB-like tRNA modifying enzyme YliG, TIGR01125 
Protein accessionYP_003143454 
Protein GI257063782 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0621] 2-methylthioadenine synthetase 
TIGRFAM ID[TIGR00089] RNA modification enzyme, MiaB family
[TIGR01125] MiaB-like tRNA modifying enzyme YliG, TIGR01125 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00016615 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.72933e-09 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
GTGTCGAATA TCGATGTAAC GTCCGTCCTG CTGAACGAGC AGGACGGACG TATTCCGTCT 
GTTAACTTCA TCACCCTGGG CTGCGCCAAG AACGAAGTGG ACTCGGCCGA CATGCAGCGC
CGACTGGTGT CGGCGGGTTT CGCGATCGTC GACGACGCCG AAGACGCCGA CGCCGTCATC
GTGAACACCT GCTCGTTCAT CCAAGCCGCC ATCGAGGAGA GCATCGACGT CATCTTGGAG
GTGGCCGGGC TCGCCAACAT CGCCGACGGC TCGTCCAAGC TCATCGTCGC AGGCTGCATG
CCCGCCCGTT TCGGGGACGA TCTGGAATCC GAGCTGAACG AGGCCAGTGC TTTCGTTCCC
TGCAGCAAGG AGGACGACAT CGTCGAGGTC GTCCAGCGTA CACTGGGCGT GAATCCCGCA
CCCTTCGCCC GCGTGGACGT GGAAAGCGGC CCTGCGGCGG CCTATGTCAA GATCAGCGAC
GGCTGCAACC GCTTCTGCTC GTTCTGTTCC ATTCCCTATA TCCGCGGACG TTACCACAGC
TTCCCTTACG AGCGCATCCG CGCCTCGGTG GAGCAGTGCA TCGCCGAAGG CTCCGTGGAA
ATCACCCTCA TCGGCCAGGA TACGGGCTGC TGGGGCTCGG ATTTCGAGGA GAAGTCCACC
ACGGCGCAGC TTCTGTCGAA CCTGGCCGAA GAGTTCCCGG ATACGTGGTT CCGTATCATG
TACGTCGAGC CCGACGGCAT AACCGACGAG CTGCTGGACG CCATCGCCGC GCATGACAAC
GTCTGCGACT ACCTGGACAT GCCGCTGCAG CATGCCAATC CCGAGCTGCT GAAATCCATG
CGCCGCAAGG GCAGCGCCCC TGAGTTCCTG AAGCTTCTGG AACGCATTCG AACCCGCGTG
CCGGGCATCA CGCTGCGCAC CACGCTCATC ACGGGCTTCC CAGGCGAAAC CGAGGAGGCC
TTCGACGAGC TCATGGAGTT TCTGGAGGAG GCCGACTTCG ATTACGTGGG CGTGTTCCCG
TATTCGAGGG AGGAAGGCAC CCGCGCCTAC GACCTTCCCG ACCAGGTAGA AGAGGAGCTG
AAGGTGGCCC GGGCCCAGGA GGTCCGCGAC CTGTGCGACG CGGTGGGGTC GGTTCATACC
GCCGATCGCA TCGGGAAAGA GCTGGACGTG CTGGTGTTGG GTGCCGAAGA GGACGGCCAG
CTGTTCGGAC GCGCCATGTG CCAGGCGCCT GATGTTGATG GCGTGGTATA CGTCGACGGA
GGCGAAGTGG GCGAAATTGT CCGCGTTACA ATTGTGGACA CGCTTGCATA CGATATGGAA
GGCGAAATCA TTCATGGCTG A
 
Protein sequence
MSNIDVTSVL LNEQDGRIPS VNFITLGCAK NEVDSADMQR RLVSAGFAIV DDAEDADAVI 
VNTCSFIQAA IEESIDVILE VAGLANIADG SSKLIVAGCM PARFGDDLES ELNEASAFVP
CSKEDDIVEV VQRTLGVNPA PFARVDVESG PAAAYVKISD GCNRFCSFCS IPYIRGRYHS
FPYERIRASV EQCIAEGSVE ITLIGQDTGC WGSDFEEKST TAQLLSNLAE EFPDTWFRIM
YVEPDGITDE LLDAIAAHDN VCDYLDMPLQ HANPELLKSM RRKGSAPEFL KLLERIRTRV
PGITLRTTLI TGFPGETEEA FDELMEFLEE ADFDYVGVFP YSREEGTRAY DLPDQVEEEL
KVARAQEVRD LCDAVGSVHT ADRIGKELDV LVLGAEEDGQ LFGRAMCQAP DVDGVVYVDG
GEVGEIVRVT IVDTLAYDME GEIIHG