| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_10590 |
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| Symbol | |
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| ID | 8394950 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | - |
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| Start bp | 1205801 |
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| End bp | 1209046 |
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| Gene Length | 3246 bp |
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| Protein Length | 1081 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644985817 |
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| Product | DNA repair ATPase |
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| Protein accession | YP_003143443 |
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| Protein GI | 257063771 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0419] ATPase involved in DNA repair |
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| TIGRFAM ID | [TIGR00618] exonuclease SbcC |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.659565 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000000614784 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAACCTT TGCATCTCAC CATGTCGGCC TTCGGCCCCT ACGCCGACGA AGTCTCCATC
GACTTCACGA CCTTCGGCGA CAGCGGACTG TACCTGATCT GCGGCGACAC CGGTGCAGGC
AAAACCATCA TCTTCGACGC CATCGCCTTC GCTCTGTACG GCACACCGTC GGGCGAGAAC
CGCACGTCAA GCATGCTGCG AAGCGACTTC GCCGACCCGG ACACGCCCAC CTTCGTGGAG
CTGGATTTCA GCTACCGCGG CAGCACCTAC CGCATCAGGC GAAACCCCGT CTACCAGCGC
CCGAAGAAAC GGGGCGAGGG GTTCACTACC GAAAACGAAC GGGCCGAGAT AACCCTGCCC
GACGGCTCGA CGATCGCCGG CAAGCAGCAC GTGGACGAAA CCGTGGTCGG CATCCTGGGC
ATCGAGAGGC TCCAGTTCAT GCAGATCGTG ATGATCGCCC AGGGCGACTT CCGCAAGCTG
CTGTCCGCCG ACACCCAGAC ACGTGCGCCC ATCTTCCGCC GGATCTTCGC CACCGAGCCT
TTGCTGGGCT TCCAGAAACG CATGGCCGAG CGCAAGAACG CCTTGGAGGC GGACCACGAC
CGGGTCATGG CAAGCGTGCA GAACTACGCG GACATGATCG CCGTGGACGA AACGGACGAG
CACGCCCGCA GCCTGAAAGA GGAACTGTCA GGCGGCGTGC AGCCGGAAAC CGCCCTGCGT
GAGGCCGAGC GGCTCGTCGA GGCCGACACG TCGGCCGCGG ATGCCGCCAA ACAGAGAGCG
GCCAAGCTTC AGGCCATTCG CGACGAGGCG AAGGCGGCTT TGGAGTCGGC CCAAACCAAC
AACGGGCTCA TCGACCGGAG GGATGCGGCC CTGCAAGTCT CCGAACAGGC GCTGGGTGCC
AAAACCCAGG CGAAGGCGGC CCTGGATGCG GATGCACATC TGGATGATGA GATAGCTGCG
CTTCGGGCCC GCGAACGCGA CCTGCGTTCG AACCTTCCTT CCTACGACGA GTATGGGCGG
CTGCAATCCG CCTTCGACGA GGCCGCTCGC GTACTGGAGT CGGCACGTCA GGCGAAAACG
CAGGTGGAAA CCGAGCTGAC ACAGGCCAGA AAGCGTCGCG ACGAAGCCGA GCAGGCCGCC
GACGAGCAGG CGAAAGCCCA GCACAATCGT GACATGCTGG CCGAAAGGCT CAAAATCGAC
CGGGCCAACG ACGAGCGTTG CGCTGCCCAG GCCAAGACCT ACGACAACAT ATTGGATGCC
GACAAACTCA TAGGCAAGCT CAAGCAGCAG GTCGAAGAGG CGAAGTCCGC CCAGGCCGCT
ATCAACGCAG CCATCGAGCA AGGCGTTTCG GACATCGAAC AGGCCGCAGC CGAGGCAAGC
GGTCTGGGCG CGGCGACCGA GGACCTGTTC GACGCCGAAA ACGACAAACG GGCAGCCCAA
GCCGACATCG CGCGTCTGGA CGCATGCTCC GCCGAACGCA CGGAGCTCGC CGATGCCTCC
GCGGCGGCCG CGAAAGACGC CGCCGCCGCA CAGGAGGCCT ACCTTCAGGC ACAGAGCACG
TTCTTAGAGT GCCAGACGAA GCTTGCCGAG GCACGCAAGG CTTATCTAGA CGAACAGGCC
GGGATCATCG CTGCCGGGCT TGAGCCGGGC AGCCCCTGCC CGGTCTGCGG ATCGACGGAC
CACCCCGCCC CGGCGCAGGC CCGTACCGAC ATTCCGAGCA GCGCCGACCT GGATGAGCTG
CAAGAGCATT ACAACGAGAC TCTGGCCGTA GCTAACGAAG CGTCCCAGAA CTCAGGTGCG
CTCAAGTCCG ACGCCGACGG GAAGCGCGCG CGGCTCGACG CCCACATCCA GGAGCACGGC
CGCGCCGAAG AACTCGCAGC GCTGCGTGCT GCTGCCGAAA AAGCCCTGGC CGAAGCCGAA
GCGCGCATCG ATCGGTCCGA GCAGGCCAAA GCCCGCTGCG AGCAGCAGGC GAAAACCGCA
CAGGAAAAGC GCGCAGTCGT CGAGGCCAAA CGTGCCGACC TGCAGAACGC GCTTGACGAC
CTGGCAGCCC TCAAATCCCA ACTGTCTGCG GCCGAGGCCA CCCGGGCGAC CCTGCAAGAT
GGCCTGGAGA CGACAGATGA AAAGACCATC CGCAGCCAGG CTCAGCAGGC CCACGAGCAG
TTCCTTCTGA CCCAAGGCGC CTTCGACGAG GCCGTCGATC TCCTTGACCG ACTATCCGAG
CTGGTCAAGC AGGCTGGTTC CGCTGCGCAG GCCCTTGACG ACCTCGAGGC TGAGCTGGAA
CAGGCGACTG CCGCCCAGCA AGAGGCCACC ACCGCGTCGA TCACGGCGAA AGCCGCAGCA
CAGGCCGCAG CAGCCAAGCT CCCCTTCCCC ACGAAGCAGG AGCTCGAAGC GGCCATCGAC
GAAGCAGCCG CACAGGCCGA CGCCTCCTTC GAAACCCGTC AGAAGCAGAA AGACGCTTTC
GACCAGGCTT CCATCGCCGC AGCCGAAGCC GCCGCACGGG CCGAGGAGCT GGTCCGCCAG
GCGGGAGACG ACGCCCGTCG TCAGGACGTT TCCCAACTCG AACAGGACCT GGCCGAAGCC
GAGCAGCAGC TGCAGGAGGC GCAGGACGCC GCGAACGCCA TCGAGCGGCG CATCCACACG
AACACCTCGC TGCTCAAACG CATCGAACAC GAGCTGAAAC GCTCGGCCGA CATCGAGGCG
CAGTACAAAG AGGTCGCCAT CGTGTCCGAC GTGGCGAACG GGCGGATGGT CAAGGCAAGC
CACTACGCTT TCGAAACCTA CGTGCAGAGC CGGTACTTCG AGCAGATGAT CTCCGCCGCC
AACCGACGGC TCGACACCCT GTCCGACGGC CGCTACGAAC TGGTGAGACG CGAGAAGGGA
TTCAGCAACC GCCAGGTGGG ACTGGATCTT GACGTGAAGG ACCACTACAC CGGCAAGACC
CGCGACGCCT CGTCGCTGTC GGGCGGCGAG GCCTTCAAGG CGTCGTTGGC CTTGGCACTT
GGCCTGTCCG ACACCGTGCA GGCCCACGCC GGCGGCATCC AGCTCGATAC CATGTTCATA
GACGAGGGCT TCGGATCGTT GGACGACGAG TCGCTGCGGC TGGCGCTCAA GGTGCTGACG
GAGCTTTCTG GAAGCGACAA GCACATCGGC ATCATCAGCC ACATCAGCGA GCTCAAGGAC
AACATCGACC GGAAGATCGT CGTGGAGCGC GGCCGAGACG GGTCATCCAT CCACGTCGAA
ACCTAA
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| Protein sequence | MKPLHLTMSA FGPYADEVSI DFTTFGDSGL YLICGDTGAG KTIIFDAIAF ALYGTPSGEN
RTSSMLRSDF ADPDTPTFVE LDFSYRGSTY RIRRNPVYQR PKKRGEGFTT ENERAEITLP
DGSTIAGKQH VDETVVGILG IERLQFMQIV MIAQGDFRKL LSADTQTRAP IFRRIFATEP
LLGFQKRMAE RKNALEADHD RVMASVQNYA DMIAVDETDE HARSLKEELS GGVQPETALR
EAERLVEADT SAADAAKQRA AKLQAIRDEA KAALESAQTN NGLIDRRDAA LQVSEQALGA
KTQAKAALDA DAHLDDEIAA LRARERDLRS NLPSYDEYGR LQSAFDEAAR VLESARQAKT
QVETELTQAR KRRDEAEQAA DEQAKAQHNR DMLAERLKID RANDERCAAQ AKTYDNILDA
DKLIGKLKQQ VEEAKSAQAA INAAIEQGVS DIEQAAAEAS GLGAATEDLF DAENDKRAAQ
ADIARLDACS AERTELADAS AAAAKDAAAA QEAYLQAQST FLECQTKLAE ARKAYLDEQA
GIIAAGLEPG SPCPVCGSTD HPAPAQARTD IPSSADLDEL QEHYNETLAV ANEASQNSGA
LKSDADGKRA RLDAHIQEHG RAEELAALRA AAEKALAEAE ARIDRSEQAK ARCEQQAKTA
QEKRAVVEAK RADLQNALDD LAALKSQLSA AEATRATLQD GLETTDEKTI RSQAQQAHEQ
FLLTQGAFDE AVDLLDRLSE LVKQAGSAAQ ALDDLEAELE QATAAQQEAT TASITAKAAA
QAAAAKLPFP TKQELEAAID EAAAQADASF ETRQKQKDAF DQASIAAAEA AARAEELVRQ
AGDDARRQDV SQLEQDLAEA EQQLQEAQDA ANAIERRIHT NTSLLKRIEH ELKRSADIEA
QYKEVAIVSD VANGRMVKAS HYAFETYVQS RYFEQMISAA NRRLDTLSDG RYELVRREKG
FSNRQVGLDL DVKDHYTGKT RDASSLSGGE AFKASLALAL GLSDTVQAHA GGIQLDTMFI
DEGFGSLDDE SLRLALKVLT ELSGSDKHIG IISHISELKD NIDRKIVVER GRDGSSIHVE
T
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