Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_10420 |
Symbol | |
ID | 8394933 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | + |
Start bp | 1185756 |
End bp | 1187114 |
Gene Length | 1359 bp |
Protein Length | 452 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 644985800 |
Product | tRNA:m(5)U-54 methyltransferase |
Protein accession | YP_003143426 |
Protein GI | 257063754 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1206] NAD(FAD)-utilizing enzyme possibly involved in translation |
TIGRFAM ID | [TIGR00137] tRNA:m(5)U-54 methyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00301359 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.00000000151314 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGAATAAAA CAGTTGACAT CATCGGCGCC GGTCTTGCCG GCAGCGAAGC CGCCCTCCAA TTGGCGCAGC GCGGCGTGCA TGTGCGTCTT TTCGAGATGC GCCCCCAGGT CAAAACGCCT GTCCATAAGA CGGATGGGTG TGCCGAGCTC GTGTGCTCGA ACTCGTTGAA AAGCATGAAA CCGCAAAGCG CCGCCGGCAT GCTGAAGTCG GAGCTGAAGG CTCTTGGAAG CAATCTGATA GGGTTCGCCT ACGATTCCAA AGTCGATGCT GGCGGGGCTT TGGCGGTCGA CAGGGATGAG TTCTCCCGTT TGACGACCGA GGCCGTGCGC AACCATCCGC TTATCGAATA CGTGGTGGGG GAGGTCGCCG AACCTGATTT TACCGACGGC GCAGACGCTG TGGTGCTGGC CAGCGGTCCT TTGACTTCCG ATGCGTTGGC TGCGTGGGTC TCTGAGAAAA CGGGCAGCGA GAACATGGCG TTCTACGATG CAGCCGCTCC CATAGTGATG GCGGATTCCT TGAATATGGA CGTCCTGTTC AGGCAGTCCC GGTACGAGGA TGAAGCCCCT GGCGACTATC TGAACGCACC GTTCACTCGA GAACAGTACG ATGCGTTCAT CGACGAGCTG GTGGCGGCCG ACCGTGTCAT CCGACGTGAT TTCGAGACGA AAGACCTATT CCAAGCATGC CAGCCCATCG AGGAGATCGC CCGCAAAGGG CATGACGCTC CGCGTTTCGG AACATGCAAA CCTGTGGGTC TTACTGACCC CGCAACGGGT CGTCGTCCTT GGGCCGCCGT GCAGCTTCGT GCAGAAAACG CGCAGAACAC CGCGTACAAC CTGGTAGGAT TCCAGACGAA TCTGACGTTT CCCGAGCAGA AGCGCGTTTT CAGCATGATT CCGGGTCTCG AGAACGCCGA GTTCGTGCGA TACGGCGTCA TGCATCGCAA CACGTTCATC CAGGCGCCGG GCCTGGTGGA GCGATCCCTT CGTTTGAAGG TGGAAACGCC AGCGCCTGTG TTCGTGGCGG GCCAGCTTTC GGGCACCGAG GGGTATTGCG AGGCCATCAT GTCGGGCCTG ATGTGCGCTT TGAACGTATA TGCGCTGCTG AACGGCATCG AGATGCCCGC CATGCCTGAG ACGACCGCTT TCGGGTCGCT GCTTGCCTAC GCAACAGATC CTCAGACCGA GGATTACCAG CCCATGCACG TGAACTTCGG CATCCTGCCG CCTCTCGAGC ACCATGAGCG GAATAAGAAG CTTCGTTACG AGCAGTATGC CCAGCGAGGC GGCCAGGCCA TGGAGGCGTA CGTCGAGAAG CTTCGTGAAT CGGGGCTGAT GGAGCGCGTC CATGTCTGA
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Protein sequence | MNKTVDIIGA GLAGSEAALQ LAQRGVHVRL FEMRPQVKTP VHKTDGCAEL VCSNSLKSMK PQSAAGMLKS ELKALGSNLI GFAYDSKVDA GGALAVDRDE FSRLTTEAVR NHPLIEYVVG EVAEPDFTDG ADAVVLASGP LTSDALAAWV SEKTGSENMA FYDAAAPIVM ADSLNMDVLF RQSRYEDEAP GDYLNAPFTR EQYDAFIDEL VAADRVIRRD FETKDLFQAC QPIEEIARKG HDAPRFGTCK PVGLTDPATG RRPWAAVQLR AENAQNTAYN LVGFQTNLTF PEQKRVFSMI PGLENAEFVR YGVMHRNTFI QAPGLVERSL RLKVETPAPV FVAGQLSGTE GYCEAIMSGL MCALNVYALL NGIEMPAMPE TTAFGSLLAY ATDPQTEDYQ PMHVNFGILP PLEHHERNKK LRYEQYAQRG GQAMEAYVEK LRESGLMERV HV
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