| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_09640 |
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| Symbol | |
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| ID | 8394855 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | + |
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| Start bp | 1105924 |
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| End bp | 1106673 |
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| Gene Length | 750 bp |
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| Protein Length | 249 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644985723 |
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| Product | ribosomal large subunit pseudouridine synthase B |
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| Protein accession | YP_003143351 |
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| Protein GI | 257063679 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.444703 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCTCAGC AGGAAGAGCG CATCGTGCCC ATGCGCGTGC AGAAGTTCCT GGCGCGCGCC
GGCGTGGCCA GCCGCCGCAG GTCGGAGGAC CTGATGACGG CAGGGCGCGT CTGCGTGAAC
GGGGAAGTGG TGACCGAGCT GGGCGCCAAG GTGGACCCGC GGGTCGACAC CGTGACCGTG
GACGGCCGCG AGGTACGCCT GACCGACGGC CCCGTCACCA TCATGCTGAA CAAGCCCTGC
GGCTTCATCA CCACCATGTC TGATCCTTAC GGACGAGCAT GTGTGGCCGA GCTGGTGCCC
TCCGACGACT ATCCCGGGCT GTTCCCCGTC GGCCGGCTGG ACACCGATAC CTCGGGCCTG
CTGCTGTTCT CCACCGACGG CGAGCTGGGA AATTCCCTTC TGCACCCGCG CCACCACGTG
GACAAGACCT ACGAGGCCTG CGTGCAGGGG CGCATTTCCG ACGAGGCCCT GCAGACCCTT
CGCGACGGCG TGGAGCTGGA CGACGGCGTC ACGTCGCCGG CTGCGGTCAC CCTGGTTTCC
CGGTCGAAGG AGAAGTCCCG CATCACGCTG GTCATCCACG AAGGGCGCAC CCGCCAGGTC
CGCCGTATGT GCCAGAAGGT GGGCCATCCT GTCTTGGAAC TGCATCGCGC CCAGTTCGGG
CCGCTGACCT TGGGCGATTT GCCGGAAGGG TCCTGGCGTG AACTGACGAA GGCCGAAGTG
GAGTCGCTGC GCAGCGCCCC GCGCCGGTAG
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| Protein sequence | MPQQEERIVP MRVQKFLARA GVASRRRSED LMTAGRVCVN GEVVTELGAK VDPRVDTVTV
DGREVRLTDG PVTIMLNKPC GFITTMSDPY GRACVAELVP SDDYPGLFPV GRLDTDTSGL
LLFSTDGELG NSLLHPRHHV DKTYEACVQG RISDEALQTL RDGVELDDGV TSPAAVTLVS
RSKEKSRITL VIHEGRTRQV RRMCQKVGHP VLELHRAQFG PLTLGDLPEG SWRELTKAEV
ESLRSAPRR
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