| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_09420 |
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| Symbol | |
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| ID | 8394833 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | + |
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| Start bp | 1088310 |
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| End bp | 1089494 |
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| Gene Length | 1185 bp |
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| Protein Length | 394 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 644985701 |
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| Product | RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase sigma factor, sigma-70 family |
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| Protein accession | YP_003143332 |
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| Protein GI | 257063660 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.702533 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGTCTGCAG CCAAAGCTAC GAAAATCGAT GATATTGATA TTGAAGAGCC CCAGGTTGAA
GACGATGTCA TGACGGAGGA TGACATCGCA AGCGCAGAAG ACAAAGACGA TACCGCCATC
GAAGACGAAG ACTTGCTCGA GGGAATTCCT GAAGAGGAGC TGAAGGCTCC TTCGGCCGCT
GCGGCAACAC TCCCCAAGAT CAAGAACAAC CGCTCTTCGC GTTCGCGCGT TCGTCGTTCC
GCGGACACGT CGGTGACCAT GCTTACCGGC GACCCTGTTC GCATGTACCT CAAAGAAATC
GGCAAAGTCC CGCTGCTTAC CCCTTCGGAG GAAGTCGACT TGGCCATGAA GATCGAGGCC
GGCGTCGCCG CTACTGCCGA ACTGGAGAAG GCGGAAGAGG AGGGCGTCGA GCTCGACCGT
CGTGAGCGCC GTCGCCTGAC CCGCGTGGAG CAGGTCGGTC TTGACGCGAA AGACCAGCTT
ATCGAAGCGA ACCTGCGTCT CGTGGTCTCC ATCGCCAAGC GTTATGTCGG TCGTGGCATG
CTGTTCCTGG ACCTCATCCA GGAAGGCAAC CTCGGCCTGA TTCGTGCGGT CGAGAAATTC
GACTACACCA AGGGCTTCAA ATTCTCCACG TACGCCACGT GGTGGATTCG TCAGGCCATC
ACCCGCGCCA TCGCCGACCA GGCGCGTACC ATCCGCATTC CGGTGCACAT GGTCGAGACC
ATCAACAAGC TTGTCCGCAT CCAGCGCCAG CTGCTGCAGG AGCTGGGCCG CGATCCCAGC
CCCGAGGAGA TCGGCGAGAA GATGGGCCTG TCTGCAGAGC GTGTGCGCGA GATCCAGAAG
CTGAGCCAGG AGCCCGTGTC CCTCGAAACG CCCATCGGCG AAGAGGAGGA TTCCCAGCTC
GGCGACTTCA TCGAGGATGA CTCCGCCATC GTTCCCGTGG ACGCGGCCAG CTTCGCTATG
ATGCAGGAGC AGCTTTCCAA GGTGCTCGAC ACCCTGGGCG AGCGCGAGCG CAACGTGGTC
ATCAAGCGCT TCGGCCTGGA AGACGGCCAG CCTCACACGT TGGAGGAGGT CGGACGGGAG
TTCGGCGTCA CTCGCGAGCG TATCCGCCAA ATCGAGAGCA AGACCTTGGC GAAATTGCGT
CATCCCAGTC GTTCTTCCAA GTTGAAGGAC TATTTGGAAG ACTAG
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| Protein sequence | MSAAKATKID DIDIEEPQVE DDVMTEDDIA SAEDKDDTAI EDEDLLEGIP EEELKAPSAA
AATLPKIKNN RSSRSRVRRS ADTSVTMLTG DPVRMYLKEI GKVPLLTPSE EVDLAMKIEA
GVAATAELEK AEEEGVELDR RERRRLTRVE QVGLDAKDQL IEANLRLVVS IAKRYVGRGM
LFLDLIQEGN LGLIRAVEKF DYTKGFKFST YATWWIRQAI TRAIADQART IRIPVHMVET
INKLVRIQRQ LLQELGRDPS PEEIGEKMGL SAERVREIQK LSQEPVSLET PIGEEEDSQL
GDFIEDDSAI VPVDAASFAM MQEQLSKVLD TLGERERNVV IKRFGLEDGQ PHTLEEVGRE
FGVTRERIRQ IESKTLAKLR HPSRSSKLKD YLED
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