| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_07100 |
|---|
| Symbol | |
|---|
| ID | 8394601 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Slackia heliotrinireducens DSM 20476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013165 |
|---|
| Strand | + |
|---|
| Start bp | 824425 |
|---|
| End bp | 825096 |
|---|
| Gene Length | 672 bp |
|---|
| Protein Length | 223 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644985471 |
|---|
| Product | riboflavin synthase, alpha subunit |
|---|
| Protein accession | YP_003143117 |
|---|
| Protein GI | 257063445 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0307] Riboflavin synthase alpha chain |
|---|
| TIGRFAM ID | [TIGR00187] riboflavin synthase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.283211 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCACTG GCATCGTTGA GGAGATGGGA ACGGTTCGGC GCGTCCTGCC CGGCGCCCGA
GCGGGCAAAA TCACCATCGG AGCGTCCAAG GTGCTCGGCG GCACGCAGAT CGGCGACAGC
ATCGCCGTCA ACGGCGTGTG CCTGACTGTG GTGGAGATGG GCGCCGACAG CTTCGTGGCC
GACGTCATGC CCGAAACCCT GTCCAAATCG GGGCTCGGCC AGCTCAAAAC CGGGGACAAA
GTGAACCTGG AGCGGGCCAT GGCCGCTGAC GGGAGGTTCG GCGGGCATAT CGTGTCGGGC
CACATCGACG GCACGGGCCG CATTGCGGAG ATGCGTCCCG ATCAGAATGC GGTGCGGGTG
CGCATCTCTG CGCCGGCCGG CATTCTCGCC CTCATTGTGG AGAAGGGGTC CATTGCGATC
GACGGCATCA GCCTGACGGT TGCTTCGGTG TCCGCCACCG ACTTCCAGGT GTCTCTCATT
CCCCATACCG GGGAGGAGAC GACCCTGCTC AAGAAGCGCG CAGGGGACAT CGTCAACCTG
GAAAACGATG TGGTGGGCAA GTACGTGCAG AAGCTGTTGG GAAGCGCTTT GGGCAAGCCG
GCGGAGCAGG CTCCGTTGCA AGAAGCGTCT TCCGGCATGA CCGTCGAGTT CCTCCAAAAA
TACGGGTTCT AA
|
|---|
| Protein sequence | MFTGIVEEMG TVRRVLPGAR AGKITIGASK VLGGTQIGDS IAVNGVCLTV VEMGADSFVA
DVMPETLSKS GLGQLKTGDK VNLERAMAAD GRFGGHIVSG HIDGTGRIAE MRPDQNAVRV
RISAPAGILA LIVEKGSIAI DGISLTVASV SATDFQVSLI PHTGEETTLL KKRAGDIVNL
ENDVVGKYVQ KLLGSALGKP AEQAPLQEAS SGMTVEFLQK YGF
|
|---|
| |