Gene Shel_05900 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_05900 
Symbol 
ID8394482 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp688375 
End bp689466 
Gene Length1092 bp 
Protein Length363 aa 
Translation table11 
GC content63% 
IMG OID644985352 
Producthypothetical protein 
Protein accessionYP_003142998 
Protein GI257063326 
COG category[S] Function unknown 
COG ID[COG1915] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00300] conserved hypothetical protein TIGR00300 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.598804 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTTTTG CTTTGAATAC GTATATGGCG CCCGATTTCG AATGCACGAC TTTCGAAAAC 
GCTCCCGATG TCGTGATGAA ACGCGTGGCG GCGGACGGCG TGGCTCCCGA GAACTACCAT
GCCATGAGCA TCTTTCCCGA GTATTTCAAG ATCGACGGCC AATGGCACCT GGCCGAGGAA
AGCCGCATGG ACTGCGTCCC CGTGTGGGAA GACGGCCGCG TGCACGTGCG CGAATTCCGG
CACCTGCGCG TCGGCGACCT GGTCATTTGC GGTCGGCAGG AAACCGGTGA GGAAGGCATC
TACGTGCATC CCGACGGATT CCGAACCGCC GAGGCCATGG CCGAGCGCTT CGCGTTCCGC
CAGAACCGCT CTCGCGAAAC CGCTTACTCC AAGGTCTACG ACGACCTGTA CGAGCTCCTC
AAATACGAGC GCGACAACGG TTACATCGTG TGGGTCATGG GGCCGGCGTT CGCCTTCAAC
GGGTACTCCC GCGAGGCCTT CGCCCGCGTG GTGGAAGGCG GCTACGCCCA TGCCGTGCTG
GCAGGCAACG CTCTGGCCAC CCACGATTTG GAGGCCGCGT ACCTGGGAAC TGCCCTGGGC
CAGGATGTGA ACACCCAGAT GAACATGGCG GGCGGCCACT ACAACCACCT CGACACCATC
AATAAGATGC GCGAATCGGG CTCTATCGGG GCGTTCATCC ACAAGCAGGG CATCGACAAC
GGCATCATGC ACGCGCTGGA AACCCGCCAC GTGCCCTATG TGCTGGCTGG ATCCATCCGC
GACGACGGCC CGCTGCCCGG GGTGTACGGC GACGCGTACG CAGCTCAGGA CGCCATGCGC
GAACACGTGA GCAAGGCCAC CACGGTCATC TGCATGGCCT CGATGCTGCA CTCCGTCGCC
ACCGGCAACA TGACGCCGTC GTTCCGCGTG CTGCCCGACG GCACGGTGCG CCAGGTGTAT
TTCTACTGCG TCGACATCGC CGAATTCGTG GTGAACAAGC TGGTCGATCG CGGGTCGCTG
GCATCCAAGG GCATCGTCAC CAACGCCCAG GACTTCATCG GTCTGGTGGC CAAAGGGCTC
GACCTGCTGT AA
 
Protein sequence
MAFALNTYMA PDFECTTFEN APDVVMKRVA ADGVAPENYH AMSIFPEYFK IDGQWHLAEE 
SRMDCVPVWE DGRVHVREFR HLRVGDLVIC GRQETGEEGI YVHPDGFRTA EAMAERFAFR
QNRSRETAYS KVYDDLYELL KYERDNGYIV WVMGPAFAFN GYSREAFARV VEGGYAHAVL
AGNALATHDL EAAYLGTALG QDVNTQMNMA GGHYNHLDTI NKMRESGSIG AFIHKQGIDN
GIMHALETRH VPYVLAGSIR DDGPLPGVYG DAYAAQDAMR EHVSKATTVI CMASMLHSVA
TGNMTPSFRV LPDGTVRQVY FYCVDIAEFV VNKLVDRGSL ASKGIVTNAQ DFIGLVAKGL
DLL