Gene Shel_05550 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_05550 
Symbol 
ID8394447 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp641968 
End bp642654 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content65% 
IMG OID644985317 
Producthypothetical protein 
Protein accessionYP_003142963 
Protein GI257063291 
COG category[S] Function unknown 
COG ID[COG1556] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGGCA ACAAGACCCT TGAAGACCTG TTGAGGCCCA TATCCGAAAG CCTTGGGCGC 
GCCGAAGTTC CGTCGCAGGT CAACCGAGAT AAGGATGCGT ATCCTCTGCC GCGTCGCGTG
ACCGACGGCA TGGATGCCGC CGCGCTGACG GACCTGTTCG CCTCCGAGGC GGGAAAGATC
CGCGTAACCG TGCACCGCTG CGCAGCGGGC GAGGCCCCTC AGGTCGTGGC CGGCATTGTG
GCCGAAGAGC CCGGCGACGT CGTGCTCGCA GGCGACAATC GGCTGGCTGC CCTGGACCTG
GTTCCCGCCG TCACGCAGGC TGCCGCCGGC AACGCCGTGA CCGTTTGGAA TCCGAATGAT
GCCAATGCGG TGGCTTCGGC CGAAAAGGCC CGGTACGGCG TGACCTTCGC CGCGGCTGGC
ATCGCCGAGA CCGCCACCGT CGTGCAGCCC GCCAGCACCT TGTGCGGCCG CTCCGTAAGC
CTGCTTCCGC TTACGCACAT CGCCGTTGTG GATGCCGCCG ACATCGTTGG CACTATGGCG
GATTACCTGC GAACCGTGGA CAAGGATGCG CTGCCGTCGC AGATCTGCTT CATCAGCGGG
CCTTCTGCCA CGGCGGACAT CGAGCTTGTG CGTGTCGAAG GCGTGCACGG CCCCATGTAC
GTTCACTACG TCATTCTGGA AAATTAA
 
Protein sequence
MIGNKTLEDL LRPISESLGR AEVPSQVNRD KDAYPLPRRV TDGMDAAALT DLFASEAGKI 
RVTVHRCAAG EAPQVVAGIV AEEPGDVVLA GDNRLAALDL VPAVTQAAAG NAVTVWNPND
ANAVASAEKA RYGVTFAAAG IAETATVVQP ASTLCGRSVS LLPLTHIAVV DAADIVGTMA
DYLRTVDKDA LPSQICFISG PSATADIELV RVEGVHGPMY VHYVILEN