Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_05510 |
Symbol | |
ID | 8394443 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | - |
Start bp | 637054 |
End bp | 638664 |
Gene Length | 1611 bp |
Protein Length | 536 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 644985313 |
Product | SSS sodium solute transporter |
Protein accession | YP_003142959 |
Protein GI | 257063287 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only |
COG ID | [COG0591] Na+/proline symporter |
TIGRFAM ID | [TIGR00813] transporter, SSS family [TIGR02121] sodium/proline symporter |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAAACA GCGACGCAAT CATCGTATTT GCGATTCTGA TTTACTTCGT GGTGGTTCTG ACCATCGGCT TCGTGTATGC GAAGCGTTCC AACTCGTCGA CCTCCGAGTA CTTCCTCGGC GGCCGCAAGG TGGGCCCCTG GTTCACGGCC CTTTCCGCCG AAGCCTCGGA CATGTCGGGC TACCTGCTCA TGGGTCTGCC CGGCCTGGCC TACTTCACGG GCGCGTCCGA CGTGGGCTGG ACGGCCATCG GCTTGGCTCT GGGCACGTAC CTCAACTGGA AGTTCGTGGC CGAGCGCCTA CGCCGGTACT CCGTGGTGGC AAACGACTCC ATCACCATCC CCGGGTTCTT CTCCAACCGC TATCATGACG AAAAGAAGAC AATCGGTACC ATCGCCGCCG TCATCATCCT CGTTTTCTTC AGCGTGTACT GCGGCAGCTG CTTTGTGACC TGCGGCCGCC TGTTCCACAC CCTGTTCGGT CTGGACTACG CTTCCATGAT GGTCCTCGGC GCTCTCATCG TGTTCCTGTA CACCATGGTC GGCGGATATC TGTCCGTCGT CGCCACCGAC TTCGTCCAGG GCTGCCTGAT GTTCTTCGCG CTGGCCGTCG TGGTCATCGG CTCGATCACC ATGGCCGGCG GCCTCGAAAA CACCGTGGCC TTCCTGAGCG ACATCCCCGG TTATCTGTCC ATGACCACCA TGGCCGTGCC GATGGTTGAC GAGACCGGCA CGCAGATGGT CGAGAACGGA ATGCCGCTGT TCGACGAGCC CGCCACTTAC GGTATCATCA CCATCATCTC CACCATGAGC TGGGGCCTTG GCTACTTCGG CATGCCGCAG GTGCTCGTCC GCTTCATGGG CATCCGTTCT CAGCAGGAAA TCAAGACCTC TCGTCACATC GCCGTGGTGT GGGTCGTCAT CTCCATGTTC TGCGCCGTCA TGATCGGACT GATCGGCCGC TACATCATCC CCAGCGAGCT TCTGACCTCC TCTTCCGCCG AGACCATCTT CATCGTCCTG TCCAAGATGA TGCTTCCCGC ATTCCTCTGC GGCATCGTGG TTTCCGGCAT TCTGGCTGCA TCGATGTCCT CCGCTTCGTC GTACCTGCTG ATCACGGGAT CGTCCGTGGC CGAAAACATC TACCGCGCGC TGTTCAAGAA GGACGCCACC GACGACCAGG TGCTCATCGT TTCCCGCATC ACCCTGGCGC TGGTGCTCAT TTTCGGTATC GTCGTGGCAT GGGATTCCAA CTCCGTCATC TTCACGGTCG TGTCCTATGC TTGGGCCGGC CTGGGCGCAT CCTTCGGCCC GCTGATGCTC TTCAGCCTGT ATTGGCGCCG CACCAACAAA GCAGGTGCCA TCGCCGGCAT GCTGACCGGC GCGGGCATGG TGCTCATCTG GCACAATCTG ATCAAGCCCA TCGGCGGCAT CTTCGGTATC TACGAGCTGG GCCCCGCATT CCTGTGCGGC TGCATCGCCA TCGTAGTTGT CTCGCTTCTG ACCAAAGAGC CTGATCAGAG CATCTACGAC GAGTTCGATC ACTACATGGA CAACGATATC GAAGGCGAGC GCAACCTGGA ACTGGTTCTG GAAGGCGACG TCACCGCGTA G
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Protein sequence | MQNSDAIIVF AILIYFVVVL TIGFVYAKRS NSSTSEYFLG GRKVGPWFTA LSAEASDMSG YLLMGLPGLA YFTGASDVGW TAIGLALGTY LNWKFVAERL RRYSVVANDS ITIPGFFSNR YHDEKKTIGT IAAVIILVFF SVYCGSCFVT CGRLFHTLFG LDYASMMVLG ALIVFLYTMV GGYLSVVATD FVQGCLMFFA LAVVVIGSIT MAGGLENTVA FLSDIPGYLS MTTMAVPMVD ETGTQMVENG MPLFDEPATY GIITIISTMS WGLGYFGMPQ VLVRFMGIRS QQEIKTSRHI AVVWVVISMF CAVMIGLIGR YIIPSELLTS SSAETIFIVL SKMMLPAFLC GIVVSGILAA SMSSASSYLL ITGSSVAENI YRALFKKDAT DDQVLIVSRI TLALVLIFGI VVAWDSNSVI FTVVSYAWAG LGASFGPLML FSLYWRRTNK AGAIAGMLTG AGMVLIWHNL IKPIGGIFGI YELGPAFLCG CIAIVVVSLL TKEPDQSIYD EFDHYMDNDI EGERNLELVL EGDVTA
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