| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_05160 |
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| Symbol | |
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| ID | 8394408 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | + |
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| Start bp | 603898 |
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| End bp | 605103 |
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| Gene Length | 1206 bp |
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| Protein Length | 401 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 644985278 |
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| Product | 23S rRNA (uracil-5-)-methyltransferase RumA |
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| Protein accession | YP_003142924 |
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| Protein GI | 257063252 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.368035 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.582976 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAAGA AGCCGACATA CTCCTGTCCC ATCGACAACC GCTGCGGCGG GTGCTCTTGG
CTGCGCGTGC CCTACGGCCA GCAGCTGGCC CGCAAGCAGC AACATGTCGA CGAGCTGTTC
GCCGACCTGA TTGATGACGG GACCCAATGC CTGCCCATCT TGGGGATGAA GGTGCCGCTG
CACTACCGCA ACAAGGTGGT GTCGCCCTTC GTGGGCATCT ACGACAAGCG CACCAGACGC
CGCCGCATCC TGTGCGGCAT GTACGAGCGC GGCACCCACT GGGTTATCGA CTCCAGCGAG
TGCCTGATTG AAAACGCCCA GGCCAAAGCT ATCATCCTGA CGATTCGCGA CCTCATGCCG
AAGTTCCGCA TCGAGCCGTA CGACGAGGAC CGCGACGAAG GCTTCCTGCG TCACGCCCAG
GTGCGCGTGG GGCACAATTC CGGCGAGGTC ATGGTCACGT TGGTGACCCG CACCGAGCAG
TTCCCGACCG CGAAGAAGTT CGTGCGCGCC CTGGTGTCGC GCCATCCCGA GATTACCACC
GTGGTGCAGA ACGTGAATTC GCGAAAGACC AACGTCATCA TGGGAGACAA GGAACGCAAG
CTGTACGGGC CGGGGTTCAT CCTAGACACG CTGTGCGGGC TGTCGTTCCG CATTTCATCT
ACGTCTTTTT ACCAGGTCAA CTCTACACAG ACCGAGGTGT TGTACAGCAC GGCCATCCGT
ATGGCGAAGC TGACCGGCAC CGAAACCGTC ATGGACGCGT ACTGCGGCAC GGGCACAATC
GGCCTGGTGG CGGTCCGCGG CATCAATGGC GAGCCGGGCG CGGCGAAGCT CATCGGGGTG
GAGGAGCGGG CCGACGCCGT GGCTGACGCT CGCAACAACG CGCGCCACAA CGGCATCGAC
AACGCCGAAT TCGTGGCGGC AGATGCGGGC GCCTACATGC GCGAGCAGGC CGAACAGGGA
CGCAGCGTCG ACGTGCTGTT CATGGATCCG CCTCGTGCGG GTTCCACGCC CGACTTCCTG
AAGGCCGCCT GCAGCATCTC GCCGAAACGC ATCGTATATA TCAGCTGCAA CCCCACGACG
CAGGCCCGCG ACGCGAAATA CCTGATCGAG CATGGGTATC GCATCGACGT GCTGCAGCCT
GTCGACATGT TCCCCCATAC CGACCATGTG GAGTGCGTCA TCTCGATGTC ACGAAGTGCG
CTGTAG
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| Protein sequence | MKKKPTYSCP IDNRCGGCSW LRVPYGQQLA RKQQHVDELF ADLIDDGTQC LPILGMKVPL
HYRNKVVSPF VGIYDKRTRR RRILCGMYER GTHWVIDSSE CLIENAQAKA IILTIRDLMP
KFRIEPYDED RDEGFLRHAQ VRVGHNSGEV MVTLVTRTEQ FPTAKKFVRA LVSRHPEITT
VVQNVNSRKT NVIMGDKERK LYGPGFILDT LCGLSFRISS TSFYQVNSTQ TEVLYSTAIR
MAKLTGTETV MDAYCGTGTI GLVAVRGING EPGAAKLIGV EERADAVADA RNNARHNGID
NAEFVAADAG AYMREQAEQG RSVDVLFMDP PRAGSTPDFL KAACSISPKR IVYISCNPTT
QARDAKYLIE HGYRIDVLQP VDMFPHTDHV ECVISMSRSA L
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