| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_04760 |
|---|
| Symbol | |
|---|
| ID | 8394368 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Slackia heliotrinireducens DSM 20476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013165 |
|---|
| Strand | + |
|---|
| Start bp | 561995 |
|---|
| End bp | 564208 |
|---|
| Gene Length | 2214 bp |
|---|
| Protein Length | 737 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 644985239 |
|---|
| Product | anaerobic ribonucleoside triphosphate reductase |
|---|
| Protein accession | YP_003142885 |
|---|
| Protein GI | 257063213 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1328] Oxygen-sensitive ribonucleoside-triphosphate reductase |
|---|
| TIGRFAM ID | [TIGR02487] anaerobic ribonucleoside-triphosphate reductase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.496041 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.437074 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATCA TCAAGCGCAA CGGCTCTGAA GTAACCTTCG ACATCTCCAA GATCATCAAC
GCGATCAAGG CTGCCAATGC CGAGGTTTCC GAGAAGGAGC GCCTCACGGA GCGTCAGGTC
GTGTACGCCG CCCAGAACGT TGCCGACCAG TGCGAGGCAG CGGGCCATTC CGTCTCCGTT
GAAGAAATCC AGGACATGGT CGAGGACGAG ATCATGAAGC TCGACCGCTT CGAGGTCGCC
CGCAAGTACA TCATCTACCG CTACGTGCAG GGCATCAAGC GCCAGAAGAA TACCACCGAC
GACAAGATCA TGGCGCTTAT CGAATGCAAC AACGAAGAGG TCAAGCAGGA GAACTCCAAC
AAGAACCCCA CCGTCAATTC GGTTCAGCGC GACTACATGG CCGGCGAGGT CTCCAAGGAC
CTGGCCATGC GCGTACTGCT GCCTAAGGAC GTGGTCGAGG CCCATAACGC CGGCATCATC
CATTTCCACG ATGCGGACTA TTTCGCCCAG CACATGCACA ACTGCGACCT GGTTAACCTG
GAAGACATGC TGCAGAACGG CACAGTCATC TCGGGAACGA TGATCGAGCG CCCGCATAGC
TTCTCCACGG CCTGCAACAT CGCAACGCAG ATCATCGCCC AGGTGGCAAG CTGCCAATAC
GGCGGTCAGT CCATCAGCCT GACGCATCTT GCGCCGTTTG TCGAGATCAG CCGCCAGCGC
ATTCGCAAGC AGGTCGTTTC GGAAATCCAG ACCCTGGGCT TCGAGGCCGA CGACGAACGG
ATTTCCGAAG TGGTCGAAGA GCGTCTGCGC GACGAGATCC GCCGAGGCGT CCAGACCATC
CAATATCAGG TCGTGACCCT TATGACCACT AACGGCCAGG CACCCTTCGT CACCGTGTTC
ATGTATCTTA ACGAGGCGCG CAACGAAGCC GAGAAGCGCG ACCTTGCCAT GATCATCGAG
GAAACCCTGC GCCAGCGCCA CCAGGGCGTC AAAAACGAGG CCGGCGTCTG GATTACCCCG
GCGTTCCCGA AGCTCATCTA CGTGCTGGAA GAGGACAACG TTCGGGAGGG CACCCCGTAT
TACTACTTGA CCAAGCTGGC CGCCAAGTGC ACCGCCAAGC GGATGGTTCC CGATTACATC
TCCGAGAAGA AGATGTTCGA GTACAAGATC AACGGCAACG GCGATGGTGA CTGCTACACC
TGCATGGGCT GCCGCAGCTT CCTGACCCCC GATCGCTCGG GCAACGGCTA CGACAACGTT
TCCAAGGCCG GCAACTACGA ACCAGGCAAG CCGAAGTATT ACGGGCGTTT CAACCAGGGC
GTCGTCACCA TCAACCTGCC CGATGTGGCG CTTTCTTCCG AAGGCGACAT GGACCGGTTC
TGGGAGATTT TCGACGAGCG CCTTGAGCTG TGCCACCGCG CCTTGCTGGC GCGCCACGAG
CGCCTGAAGG GCACGCTGTC CGATGCGGCG CCCATCCTGT GGCAGTACGG CGCGCTTGCC
CGCCTGGAGA AGGGCGAAAC CATCGACAAG CTGCTGTACG GCGGATACTC TACCATCAGC
CTGGGTTACG CGGGTCTGTA CGAGTGCGTC AAATACATGA CCGGCCACAG CCACACCGAT
CCGGAGGCAA CGCCGTTCGC GCTGGCCGTC ATGCAGCGTA TGAACGACAA GTGCGCCGAG
TGGAAGATGG AGAGCAACAT CGATTTCTCC CTGTACGGTA CGCCGTTGGA GTCCACCACT
TATAAGTTCG CGAAGGCCCT GCAGCGCCGC TTCGGTATCA TCAAGGGCAT CACGGACAAG
GGCTACATCA CCAACAGCTA TCACGTGCAT GTCACGGAGG AGATCGACGC GTTCACCAAG
CTGAAGTTCG AAAGCGCCTT CCAACGCCTG TCTCCCGGCG GAGCCATCTC TTACGTCGAG
GTTCCCGACA TGCAGGACAA CCTGCCGGCT GTGCTGGACG TCATGGAGTA CATCTACGAC
AACATCATGT ACGCGGAGCT GAACACCAAA TCCGACTTCT GCCAGTGCTG CGGATACGAC
GGCGAAATCC AGATCATCGA GGAAGACGGC AAGCTGGAGT GGGAGTGCCC CAACTGCGGA
AACCGCGACC AGGACACGCT GAACGTCGCC CGCCGCACAT GCGGCTACAT CGGCACCCAG
TTCTGGAACC AGGGTCGCAC CGAGGAGATC AGGGATCGCG TGCTGCACTT GTAA
|
|---|
| Protein sequence | MKIIKRNGSE VTFDISKIIN AIKAANAEVS EKERLTERQV VYAAQNVADQ CEAAGHSVSV
EEIQDMVEDE IMKLDRFEVA RKYIIYRYVQ GIKRQKNTTD DKIMALIECN NEEVKQENSN
KNPTVNSVQR DYMAGEVSKD LAMRVLLPKD VVEAHNAGII HFHDADYFAQ HMHNCDLVNL
EDMLQNGTVI SGTMIERPHS FSTACNIATQ IIAQVASCQY GGQSISLTHL APFVEISRQR
IRKQVVSEIQ TLGFEADDER ISEVVEERLR DEIRRGVQTI QYQVVTLMTT NGQAPFVTVF
MYLNEARNEA EKRDLAMIIE ETLRQRHQGV KNEAGVWITP AFPKLIYVLE EDNVREGTPY
YYLTKLAAKC TAKRMVPDYI SEKKMFEYKI NGNGDGDCYT CMGCRSFLTP DRSGNGYDNV
SKAGNYEPGK PKYYGRFNQG VVTINLPDVA LSSEGDMDRF WEIFDERLEL CHRALLARHE
RLKGTLSDAA PILWQYGALA RLEKGETIDK LLYGGYSTIS LGYAGLYECV KYMTGHSHTD
PEATPFALAV MQRMNDKCAE WKMESNIDFS LYGTPLESTT YKFAKALQRR FGIIKGITDK
GYITNSYHVH VTEEIDAFTK LKFESAFQRL SPGGAISYVE VPDMQDNLPA VLDVMEYIYD
NIMYAELNTK SDFCQCCGYD GEIQIIEEDG KLEWECPNCG NRDQDTLNVA RRTCGYIGTQ
FWNQGRTEEI RDRVLHL
|
|---|
| |