Gene Shel_04650 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_04650 
SymbolpanF 
ID8394357 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp549981 
End bp551471 
Gene Length1491 bp 
Protein Length496 aa 
Translation table11 
GC content61% 
IMG OID644985228 
Productsodium/panthothenate symporter 
Protein accessionYP_003142874 
Protein GI257063202 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG4145] Na+/panthothenate symporter 
TIGRFAM ID[TIGR02119] sodium/pantothenate symporter
[TIGR00813] transporter, SSS family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00393427 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value8.95838e-05 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGCGCTA ACATCGCAGG CATCCTGCCC GTCCTCCTGT TCTTGGCGTT TGCGATGGTG 
GTGGCCATCG TCGTCCGTCG CCGCGCTGCC AAGCAGGCGG AACAGGGATT CGTGAAGGAA
TACTTCATCG GCAACCGCGG TCTGGGCGCC TTCGTCCTGG CCATGACCAC CATCGCGACG
TACGGTTCCG TCAGCTCGTT CGTGGGCGGC CCGGGCCAGG CTTGGAACAT CGGCTGGGGC
TGGGTTTATA TGGCTGCCGT CCAGGTCACG ACGCTGTTCT TGCTGTATGG CATCATGGGC
AAGAAGATGG CCCTGGTTTC CCGCAAGACG GGCGCCGTCA CGGTCATCGA CGTCATCCGC
GAGCGTTACC AATCCGACGC GCTGGCCATC ATTGCAGCCG TCATCATGGT GCTGTTCTTC
GCAACCACGA TGATCGCCCA GTTCGTAGGC GGAGCAAAGC TGTTCGAATA CGTGACCGGC
TACTCCTACA ATATCGGCCT GATCATCTTC GGCGTGGCCT GCATCCTGTT CACCACCATC
GGCGGCTTCC GCGGCGTGGC CGTTACCGAC GCCTTGTGCG GCATCGCCAT GCTCGTGGGT
ATCGCCGTGC TGGCGGGCGG CATCCTGAAT GCAGGCGGCG GCTACGAGGC CGTCATGACC
ACCATCGCTA CCAACCATCC CGAGATGATG GAACCCCTGT CTGGCGGTAA CATGCCCTAC
GGCCTGTACT TCACCCAGTG GCTGCTGGTG GGCATCTTCA CCTTCTGCCT GCCGCAGTCC
GTTGTCCGTA CCATGGGTTA TAAGGATACG AAGAGCCTGC ACAACGCCAT GATCTGGGGC
ACCGTGATCC TCGGCGCTAT GATGATCGGC GTTACCTCGC TGGGCGTGCT GAGCGCCGGC
GTTCTGACAG ACACCGTCGA AGCCTACGGC GGCAGCATCG ACAACATCAT CCCGCAGGCT
ATCGTGCAGA CGCTTCCCTC GTGGCTGGCC GGAGTGGCCA TCATCGGCCC TATCGCCGCT
TCCATCTCCA CGGTCAGCTC GCTGCTGATC GCCTCCAGCT CGGCCATCAT CAAGGACATC
TGGCTGCATC ATTGCGAAGC GAAGGGCGCT CTTCCCGAGG ACAAGCTGGT CCGCAACTCC
AGCCAGGCCA TCACCCTTTT GCTCGGTGCC ATCGTGTTCA TCCTGTCTAT CGTCCCGCCC
GAGGTCATCT GGAAAATCAA CATGTTCGCT TTCGGCGGTC TGGAAACGGC GTTCTGCTGG
GTTCTGGTGG GCGGTCTGTT CTGGAAGCGT GCGAACAAGT ACGGCGCCAT CCTTTCCATG
GCGGGCGGTG TGCTGGTCTA CTGCCTGGCC ATGTACTTCG GATTCAAGAT CGGCGGTTTG
CATCAGATTA CCATCGGCAT CACCGTGTCG TTCATCCTGA TGATCATCGG TTCGCTTGCC
ACCAAGGCCG ACGATCCGAA GCGTTTGGAG ATGTTCTTCC CCAGCAAGTA G
 
Protein sequence
MSANIAGILP VLLFLAFAMV VAIVVRRRAA KQAEQGFVKE YFIGNRGLGA FVLAMTTIAT 
YGSVSSFVGG PGQAWNIGWG WVYMAAVQVT TLFLLYGIMG KKMALVSRKT GAVTVIDVIR
ERYQSDALAI IAAVIMVLFF ATTMIAQFVG GAKLFEYVTG YSYNIGLIIF GVACILFTTI
GGFRGVAVTD ALCGIAMLVG IAVLAGGILN AGGGYEAVMT TIATNHPEMM EPLSGGNMPY
GLYFTQWLLV GIFTFCLPQS VVRTMGYKDT KSLHNAMIWG TVILGAMMIG VTSLGVLSAG
VLTDTVEAYG GSIDNIIPQA IVQTLPSWLA GVAIIGPIAA SISTVSSLLI ASSSAIIKDI
WLHHCEAKGA LPEDKLVRNS SQAITLLLGA IVFILSIVPP EVIWKINMFA FGGLETAFCW
VLVGGLFWKR ANKYGAILSM AGGVLVYCLA MYFGFKIGGL HQITIGITVS FILMIIGSLA
TKADDPKRLE MFFPSK