Gene Shel_04310 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_04310 
Symbol 
ID8394323 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp514761 
End bp517184 
Gene Length2424 bp 
Protein Length807 aa 
Translation table11 
GC content61% 
IMG OID644985195 
Productanaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family 
Protein accessionYP_003142841 
Protein GI257063169 
COG category[C] Energy production and conversion 
COG ID[COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing 
TIGRFAM ID[TIGR02166] anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family
[TIGR00509] molybdopterin guanine dinucleotide-containing S/N-oxide reductases
[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00139341 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.037099 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCAAAT CCACATTGGG GGAGGTCAGC CGCCGTTCGT TCGTAAAGAC GGCTGCTGGT 
TTGGGCGCCT TTGCCGCACT CGGCGTTACC GGCTGCAGCG CTTCGTTCCA TGAGGAAGAG
CCTGCGACTG AGGAAGAAGT CGAAGTCGAG GCGGAAGAGC ATGAAACTTG GGCGCATTGT
TCGCCGAACT GCTATGGTCG CTGCGCGCTG CGCGTTGTGA CCCAGAACGA CGAAGTCGTG
CGCGTTGAAA CCGACAACAC CGGTGATGAT GTGTTCGGCG ACCATCAGAT CCGCGCTTGC
CTGCGCGGTC GTTCCATGCG TCGCTGGATC AACCATCCCG ATCGTCTGCA GTATCCCATG
AAGCGCGTCG GCAAGCGTGG CAGCGGCGAG TACGAGCGCA TCACCTGGGA AGAGGCTATC
GATACCATTT GCGAGAAGTA CCAGAGCATC CTTGACGAGT ACGGCCCTGA AGCCGTGCTC
ATCGCGCCCG CCAGCGGCGT CAAGGCTCAG AACATCTCCG ACTTCGTGGG TCGTTTCTGC
AACTGCTTGG GCGGTTATGT CCACCAGTCC GGCGGTTACA GCATGGCTCA GGCCCGCGTC
TCCGTTCCTT ACCTGTACGG CGACCGCAAG AACAACGCCA CCTACGACCT GAAGAACTCC
AAGTTGTGTG TCATGTTCGG CGACAACCAC GCCGATAACA AGCTGGGCGG CGCAGGCGAC
TGCTACCAGA TCCAGCAGGC CCTGGAGGCC GGCGGCGCCA AGGTCATCGT CATCGACCCG
CGCTACACCG CCACTTCGGC CCTGCGTGCC GACCAGTGGA TTCCCATCCG TCCCGGCACC
GACGCAGCTC TGGCTGACGC CATCGCTTAC GTCCTGATCA CCGAGGACAT GGTGGACCAG
GATTTCCTGG ACACCTACTG CATCGGCTAC GACGAGAGTA CGCTTCCCGA AAGCGCTCCC
GCAAAGTCCG ACTACAAGAG CCACATTCTG GGCGAAGGCC CGGACGGCAC CGCCAAGACC
CCTGCTTGGG CCAGCGAAAT CACCGGCATC CCCGAACAGG TCATCAGCGA CCTGGCGCAT
GAGATCGGCA CCACGCAGCC GTGCTGCATC ATGCAGGGAC TCGGTCCCCA GCGCCAGATG
AGCGGCGAGC AGACCTGCCG TGCCATCTGC ATGCTCGAGG TTCTGCTCGG CGGCATTGGC
AAGCGCGGCA TGGGCACCGG ATTCATGTTC GGCAACGACA AGATCGACGG CGTAGAAGTT
CCCATGGGCA AGGGCACTTT CAACATCACC ATCCCTACTT TCATGTACAT GGACGCCATC
GACGACTACA CCAAGATCAC GCTGCTCGAC TCCGGCCTGA CCGGCGCCGG CCGCCTGCGT
CAGCCCATCA AGATGATGTT CAGCCACGGC GGTAACAGCC TGACCAACCA GCACGGCAAC
ATCAATCGCA GCCATGAGAT CCTCGGCGAC GAGTCCAAGT GCGAAATGAT CGTCGTGTGG
GAAACCATGC TGACCGACTC CGCCAAGTAC GCCGACATCA TCCTGCCTGA CCTCATGCCT
TCCGAGCAGC CCAGCTTCGC CGTCGGCGAA TACTCCGGCA ACATGGGCTA CGCCATTCTG
GGCACCGCCT GCACCGAGCC CAAGTTCGAG CGCAAGACCC TGTACCAGAG CCTGACGCTC
ATGGCTGAGA AGATGGGCGT TGCCGAGAAG TTCACCGAGG GTCTGGACGA GATGGGCTGG
CTGGAGCAGA TGTACGCCAC CGCCCGCGAA GAGGATCCCG ATCTGCCCGA GTGGGAAGAC
ATGCTGGAGA TGGGCGTCTA TCGCCGCCTG CACAAGGACG GCGCCGACGG CGGCTCCATC
GCCTACAAGA AGTTCATCGA CAACCCGGGC AAGGAGAGCC TGAAGACTCC TTCCGGAAAG
ATCGAGATCT ACTCCGAGCG TCTGGCCAAG ATCGCCGATA CGTGGCATCT GGGCGAAAAC
GACGTCATCA TGCCGATTCC CGTGTACGTG CCTCCTGCAG AGTACGGCTA CGACGACCCG
CGTCGTGACG AGTACCCGCT GCAGATGGTC GGCTTCCATG AGCGCGGCCA TGCGCATTCG
TCGTTCACCC AGATCGACAT CCTGCAGGCC ACCAACATGA AGCGTTTCTG GATCAACACG
GCCGACGCCG AAGAGCGCGG CATCGCCGAT GACGACATGG TCGAGGTCTT CAACGAGTTC
GGCCGCATGC AGGTTCAGGC CAAGGTGACC GACCGCATCA TGCCGGGCGT CACGGCCATG
GGCCAGGGCT ATTGGTTCGA AGCGAACGAG GACGGCGTCG ACGTGGGCGG TTGCATCAAC
ACGCTCACCA ACTCCCATCC GTCTCCGCTG GCCAAGGCCA TTCCCGCCCA TACCAACCTC
GTTGAAGTCA AGAAGGTGAT GTAA
 
Protein sequence
MSKSTLGEVS RRSFVKTAAG LGAFAALGVT GCSASFHEEE PATEEEVEVE AEEHETWAHC 
SPNCYGRCAL RVVTQNDEVV RVETDNTGDD VFGDHQIRAC LRGRSMRRWI NHPDRLQYPM
KRVGKRGSGE YERITWEEAI DTICEKYQSI LDEYGPEAVL IAPASGVKAQ NISDFVGRFC
NCLGGYVHQS GGYSMAQARV SVPYLYGDRK NNATYDLKNS KLCVMFGDNH ADNKLGGAGD
CYQIQQALEA GGAKVIVIDP RYTATSALRA DQWIPIRPGT DAALADAIAY VLITEDMVDQ
DFLDTYCIGY DESTLPESAP AKSDYKSHIL GEGPDGTAKT PAWASEITGI PEQVISDLAH
EIGTTQPCCI MQGLGPQRQM SGEQTCRAIC MLEVLLGGIG KRGMGTGFMF GNDKIDGVEV
PMGKGTFNIT IPTFMYMDAI DDYTKITLLD SGLTGAGRLR QPIKMMFSHG GNSLTNQHGN
INRSHEILGD ESKCEMIVVW ETMLTDSAKY ADIILPDLMP SEQPSFAVGE YSGNMGYAIL
GTACTEPKFE RKTLYQSLTL MAEKMGVAEK FTEGLDEMGW LEQMYATARE EDPDLPEWED
MLEMGVYRRL HKDGADGGSI AYKKFIDNPG KESLKTPSGK IEIYSERLAK IADTWHLGEN
DVIMPIPVYV PPAEYGYDDP RRDEYPLQMV GFHERGHAHS SFTQIDILQA TNMKRFWINT
ADAEERGIAD DDMVEVFNEF GRMQVQAKVT DRIMPGVTAM GQGYWFEANE DGVDVGGCIN
TLTNSHPSPL AKAIPAHTNL VEVKKVM