| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_04070 |
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| Symbol | |
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| ID | 8394299 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | - |
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| Start bp | 483545 |
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| End bp | 486643 |
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| Gene Length | 3099 bp |
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| Protein Length | 1032 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644985171 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_003142817 |
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| Protein GI | 257063145 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.350939 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGGATG CAGCCCATCT GTTCATAATG GAGGCCGCGC CGGAATCTCC GGTTTCGGAC
CTCTTGGGCC GCCGCGTGTC CGTATCATCT GGCCGTATCG GCGAAGACGC TCCGCTGGAA
GAAATGCCCT CGTTTGAATC AGACGGCGTC GAGCTGCGCG TGAAGGCGTA CCGCGTCCGC
GTGTCGAGCG TCGGAGCCGA TCCGTATGCT CTAGCTATGA GCACGGCACG GGCCGAATAC
GAGATGCTCG CGGCGCTCCC GACGACGGAC GGGCTTGCGG CCTGCGCGCT CGGCGTGCTG
CAGACGGCCA AGGGCGACCA CCCCTGCGTG GTGTTCCAGG TCGCCGGGGC GTCGGACGGC
GGAACGGGCG AAACGACCGA AGCCGGGGCC GCAGCTCAGG CTCAGGCCGA AACGGGAGCT
CAAGCTGAAG CCGCTGCCGG CGCCGAGACA GAAGCTGCGA CCGAAACCCA ACCCTCTGCC
CGGGACCACT TCGAAGCGGG CCTTCGCGCC GAAATCGGCG AAGGAGTTGA GCGCAACATC
GGCACGGCCC TCTCCCATTA TCTTAAAGGC GCCGACCTGG GCGACCCCGA TTGCCAATAC
CGTGCGGCGT ACCTTTTGGA CACGGAAGAA TCCCTCGCGT TCCAAAGGGG TCGGTGCGCC
GCGCTGTACG AAAGCGCCGC ATCGTCCGGC AATGCGGACG CCCTGTCCAA CCTGGCTCTT
TTCTATCTGT CGGGCGACTT GGTCGGACGC AACCCGGTCC GGGCAGCCGA ACTTATGGAA
TCCGCCGCGA AGCTTGGCAA CGCAGCGGCC CAATACAACC TGGCGATCAT CTACCGCGAC
GGCGAAGACG GCGTTCCCGC CGATCTGAAT CGGGCGATTC CCCTGTTCAA GGCGGCAGCC
GAGCAAGGCG ATGCAGATGC CGCCCTGGCG GTGGCCGATG CATGCGCGCA AGGGGAAGGC
GCCGTCAAGA ATCCGAAGGA AGCGGCGCGG TGGTACCGCA AGGCCGCCGA GGCGGGCCGC
ATGGATGCCA TGTACGAGCT GGGTCTTCTG TACGAGCGGG GCAACGGCGT GACCGAAAAC
CGTCGGGAAG CGGTCAGTTG GTACCGCAAG GCCGCAGACG CGGGCAACGC GGATGCCATG
TTCCGGCTGG CGTCCATACG CCTGCACGGC AACGGCGCGA AAAAGGATCT CGCCGAGGCC
TTCGACCTGT TCAAAAGGGC CGCCGAGGCA GGCCATCCCC AGGCCATGTT CAACACAGGC
GTCATGTACG CCCATGGCGA CGGCGTCAAA AAGGACGCGA CGGAAGCCGC AAGCTGGTAC
CGCAAGGCGG CGGATGCGGG CGTCACAGGC GCGATGTGCA ATCTGGGCAT CATGCATGAA
CGCGGCGACG GCGTGGCCAA GGATCCGCAG GAAGCGGCCA GCCTGTACCG GAAGGCGTCG
GACCTGGACA ATGCGCTGGG CGCATACAAC CTGGGCATCA TGCTCCTCAA CGGTTCCGGC
GTGGCGAAAA ACCCGCAGGA AGCCGCACTC CACCTTCGCC GGGCGGCGGC GTTGGGCAAT
ACGGAAGCCA TGATCAAGAT GGGCGAAGCG TATGAGTCGG GTGAAGGGGT TCGCAAGAAC
AAGAAATCGG CGGTCAAGTT CTACAGGGAT GCGGCGTCGC AGGGCAACAC CGAAGCGATG
TGCAAACTGG GCGCACTGTA CGAAGAAGGC AGCGGCGTGG ATCGCAACCG GCAGGAAGCC
GCCGAGTGGT ACCGGAAGGC CGCGAAGCTC GGCAGCACCG AGGCGACGTG CGCCCTTGGA
AAGCTGTGCC GCAAACATGA CGCGTCGACG GCATTCGGGC TGTTCGAGTC CGCCGCGAAA
GAGGGCAACG CCGAAGCGAT GGGCATCCTG GCCGACATGC TTTCCCAAGG AGAAGGGACC
GGGGCGGACC GCCAGACGGC CCTGCTCTGG TACTGCAAAG CAGCCGACGC CGGCAACGCC
GAGGCCATGT ACAACCTGGG CGTCAAGTGC GCCAACGGCA TAGACGTCGA AAAAGACCAG
CAGAAGGCGA TAGGCTGGTA CCGCAAGGCG GCCGATGCGG GCCATGCAGC CGCCATGTGC
AGCCTGGGCA CCATATGCGA ATACGGCAAC GGCGTGACAA AGAACCTGGC CCAGGCGGTG
AAATGGTACC GCGACGCTGC GAACCTGGGC AACCCGAACG CCATGTACAA CCTGGCCGTC
AGGCTCGCGA ACGGCGGAGG CGTGAAGAAG AACGCCAAGC AGGCAGCGAA CTGGTACCGC
AAGGCGGCGG ATGCGGGGCA TGCACCGGCC ATGAACAGCC TGGGCCTCAT GTACGAGCAG
GGCGAAGGCG TGGCCAAGAA CCACGCCGAA GCGATGCGCT GGTTCCGCAA GGCGGCCGAT
GCGGGCAACG TCATGGCGAT GTGCAATATG GGACGCATGC TCTCAACCGG CAAGGAAGCT
TCGAAAAACC TGATGGAAGC GGCACAGTGG TACCGCAAGG CCGCCGAATT CGGCGAGACG
GAATCCATGT ACAACCTTGG GCGCATGCTT GCCAACGGCC AAGGGACCGG GAAGAACCCT
TTGGAGGCTG CGCAGTGGTT CCGCAGGGCG GCCGAAGACG GGCACGAGCT TGCCATGTAC
CACCTGGGCG TCATGTATGC CAACGGCGAA GGCGTGGCAA GAAACCCCCA CGAGGCTTTG
ACCTGGTATA GAAAGGCCGC AGACCTTGGA AACGCCAACG CCATGTACAA CCTGGGCGTC
ATGCTTGCAG GCGGCATAGG CGTGGAGAGG AATCCGCAGC AAGCGGCGCG TTGGTACCGC
AAGGCCATCG GCAAGGGACA TGTGGCCGCC ATGAACAACC TGGCGCTCAT GTACGAGCGC
GGCGAAGGCG TCGAGAAGAA CCTCAAAGAG GCGGTCAGCT GGTGGAAGAT CGCCGCCAAG
AAGGGGTCGC CGAACGCCAT GTACAACCTG GCCCGCATGT ACGAATCGGG CCAAGGCGTG
GCGAAGGACA AGAAGGAAGC CCAGAACTGG TATAGGAAAG CCGCAAGCTA CGGGCAGGCA
GGCGCGCAAC TCTGGATGAA GAAGCACCGG CTGGTTTAG
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| Protein sequence | MRDAAHLFIM EAAPESPVSD LLGRRVSVSS GRIGEDAPLE EMPSFESDGV ELRVKAYRVR
VSSVGADPYA LAMSTARAEY EMLAALPTTD GLAACALGVL QTAKGDHPCV VFQVAGASDG
GTGETTEAGA AAQAQAETGA QAEAAAGAET EAATETQPSA RDHFEAGLRA EIGEGVERNI
GTALSHYLKG ADLGDPDCQY RAAYLLDTEE SLAFQRGRCA ALYESAASSG NADALSNLAL
FYLSGDLVGR NPVRAAELME SAAKLGNAAA QYNLAIIYRD GEDGVPADLN RAIPLFKAAA
EQGDADAALA VADACAQGEG AVKNPKEAAR WYRKAAEAGR MDAMYELGLL YERGNGVTEN
RREAVSWYRK AADAGNADAM FRLASIRLHG NGAKKDLAEA FDLFKRAAEA GHPQAMFNTG
VMYAHGDGVK KDATEAASWY RKAADAGVTG AMCNLGIMHE RGDGVAKDPQ EAASLYRKAS
DLDNALGAYN LGIMLLNGSG VAKNPQEAAL HLRRAAALGN TEAMIKMGEA YESGEGVRKN
KKSAVKFYRD AASQGNTEAM CKLGALYEEG SGVDRNRQEA AEWYRKAAKL GSTEATCALG
KLCRKHDAST AFGLFESAAK EGNAEAMGIL ADMLSQGEGT GADRQTALLW YCKAADAGNA
EAMYNLGVKC ANGIDVEKDQ QKAIGWYRKA ADAGHAAAMC SLGTICEYGN GVTKNLAQAV
KWYRDAANLG NPNAMYNLAV RLANGGGVKK NAKQAANWYR KAADAGHAPA MNSLGLMYEQ
GEGVAKNHAE AMRWFRKAAD AGNVMAMCNM GRMLSTGKEA SKNLMEAAQW YRKAAEFGET
ESMYNLGRML ANGQGTGKNP LEAAQWFRRA AEDGHELAMY HLGVMYANGE GVARNPHEAL
TWYRKAADLG NANAMYNLGV MLAGGIGVER NPQQAARWYR KAIGKGHVAA MNNLALMYER
GEGVEKNLKE AVSWWKIAAK KGSPNAMYNL ARMYESGQGV AKDKKEAQNW YRKAASYGQA
GAQLWMKKHR LV
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