Gene Shel_00980 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_00980 
Symbol 
ID8393990 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp126790 
End bp128169 
Gene Length1380 bp 
Protein Length459 aa 
Translation table11 
GC content62% 
IMG OID644984871 
Productpredicted transcriptional regulator 
Protein accessionYP_003142521 
Protein GI257062849 
COG category[K] Transcription 
COG ID[COG1396] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.224409 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.709118 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATTACG AGGTTGCCGA GCGCTTGGCA GAATTACGGC GCGCCAAAGG ATTGAGCCAG 
GAGGAGCTTG CCCATGAACT CGGTTTGTCG CGGCAGGCCG TTTCGAAATG GGAGCGGGCC
GAAAGTTCGC CCGACACCGA CAACCTGATT GCTCTTGCGA AGCTCTACGG GATGACGCTT
GACGAGCTGG TCCATGGCCC GGCCGAGGCA GTTGGCCATG CCGATTCAGG TGACGATGCG
GATGCTCCCG ATGGTGCTGA TGAGTCCCTC GCGGAAGCGT CCGAAACGAC GGCTTCGCCA
AACGAATCCC TTCTTAACCA GGCCTCTGGC AGCGGTTCGG CAAACGGAGG TTCCGCCTAT
GCCCATGCGT CTTCGGCTGG CGATGCTACG GGTCCGCTTC CGTATTCGCC CACGCCGCCG
GTGGGTTCGG CGACGTATGC GGAGACGGAG GCGCACGTGG CACGCAAGGT CGCAATCGCC
GTCGTAGCCA CGTTGGCGGT GCTCGGGTTG CTTGTGGCGC TTGTCACGAT GTTGGCGAAT
CGATCCTCGA GTGTGGCGGA TGTTCCGTCG GCCGAAGTGT CCGAGGCGCC CGCAGGCGAA
CCAACTCGTG TCGAAACTCC TGATCAAGAG ACGGGCGGAG GATTCGTTGC GGCAAACGAG
GTGACCAGTC TGTCCATCCG CTGGGTATCG GGCGGTGCGG ACATCGTGGT CGTCAGAGAT
GAGGAGACGG GCGGCAACAT CGAGTTCGAC GAAGTTGTCG AGTCGGGAGA CAATGCCGAG
GCCATGACGT ACACGCTTCA AAATGGAAGG CTGACGCTGT TGTACGGTCA GCCTGGCGCA
GCCTACAACA TGTGCAACAC CAGCTGCGCA CCCAAACAGC TGACCGTGAA GATACCCGAG
AGCTGTGCAT CCCAGCTCGG CGTCTTCGAG CTTGAAGCAG GAAGCGGACA CTACGTAGTT
GGGGAAGGCA TCGTGTGCAG GGAACTAGAC GTGGACGTAG CATCCGGCTC GGTAAGGATC
GGCTCCATCG ACGCGGATGA CGTGGAGCTG GAAGCCGCAA GCGGCGACCT GTCGGTCGGC
GGCATGTTCG GGCTTCTGGA TGTGGACGTG GCCAGCGGAA GCGTCGCCGT TTCGTGCGTC
AACGAAGTGC CTTCCCATGT AGACGCCGAT ATTGCCAGCG GACGGTTTGA ACTGCTGCTT
CCCGCGGACC GCGGGTTCAC CGCGCGTGTC GAGGTGGGCT CGGGGAACGT GAGTTCGGAG
TTTCCTGGCA CCACGTCCAG CGGCGGGCGT CATGAGTCTG TGTATGCAGG TGGTGACGGC
AGCGTCAAGG TGGATGCCGA AGTCGCCAGC GGAGAGTTGG TTTTCGGGAC CAGCGATTAA
 
Protein sequence
MNYEVAERLA ELRRAKGLSQ EELAHELGLS RQAVSKWERA ESSPDTDNLI ALAKLYGMTL 
DELVHGPAEA VGHADSGDDA DAPDGADESL AEASETTASP NESLLNQASG SGSANGGSAY
AHASSAGDAT GPLPYSPTPP VGSATYAETE AHVARKVAIA VVATLAVLGL LVALVTMLAN
RSSSVADVPS AEVSEAPAGE PTRVETPDQE TGGGFVAANE VTSLSIRWVS GGADIVVVRD
EETGGNIEFD EVVESGDNAE AMTYTLQNGR LTLLYGQPGA AYNMCNTSCA PKQLTVKIPE
SCASQLGVFE LEAGSGHYVV GEGIVCRELD VDVASGSVRI GSIDADDVEL EAASGDLSVG
GMFGLLDVDV ASGSVAVSCV NEVPSHVDAD IASGRFELLL PADRGFTARV EVGSGNVSSE
FPGTTSSGGR HESVYAGGDG SVKVDAEVAS GELVFGTSD