| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_00060 |
|---|
| Symbol | |
|---|
| ID | 8393898 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Slackia heliotrinireducens DSM 20476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013165 |
|---|
| Strand | + |
|---|
| Start bp | 6635 |
|---|
| End bp | 9151 |
|---|
| Gene Length | 2517 bp |
|---|
| Protein Length | 838 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 644984781 |
|---|
| Product | DNA gyrase subunit A |
|---|
| Protein accession | YP_003142432 |
|---|
| Protein GI | 257062760 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit |
|---|
| TIGRFAM ID | [TIGR01063] DNA gyrase, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.120033 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0325774 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCTGATA AAGAGATTCT AGAGGCGGCG GATTCCGGCA ACACCGGTGT TCAGACCGCC
GAACTCGGCC GCGAGATGCG CACCTCGTTC CTCGAGTATT CGATGAGCGT TATCGTCTCC
CGCGCGCTGC CTGACGTCCG CGACGGCTTG AAGCCTGTTC ACCGCCGCAT CCTGTACGCC
ATGTACGACT CCGGCATCAC GCCGAACAAG CCTCATAGCA AGTCTGCCCG TACCGTCGGC
GACGTCATTG GTAAGTACCA CCCGCACGGC GACTCCGCGG TGTACGACGC CATGGTGCGT
CTGGCGCAGG ACTTCAACAT GCGCGTTCCT CTGGTTGACG GCCACGGCAA CTTCGGTTCC
ATCGACGGCG ACTCCGCTGC AGCCATGCGT TACACTGAGG CCCGTCTGGC CAAGCCGGCC
ATGGAGCTTT TGGCCGACCT GGGTAAGGAA ACCGTCGATT GGGTTCCCAA CTACGACGAA
AGCCTGCAGG AACCTTCCGT TCTTCCGGCC CGTTTCCCGA ACCTGCTGGT CAACGGCTCG
AACGGCATCG CCGTCGGCAT GGCTACCAAC ATTCCGCCCC ACAACCTGGG CGAAGCCATC
GACGCTACGT GCTTGATGCT CGACAACCCC GACGTGACCA CCGAAGAGCT CATGGAGGTC
ATGCCTGGCC CCGACTTCCC CACGGGCGGC GTGATCCGCG GTCGCGAGGG CATTATCAGC
GCGTACGAAA CCGGCCGCGG CAGCTTGACC ATCCAGTCTT CCTACAAGAT TAAAGAAGGC
AAGAACGGCA AGACCAGCAT CATCATTACC GAGATTCCGT ATCAGGTGAA CCGTTCCAAC
CTCATGCAGA AGATCGGCGA GCTGGTCCGC GACAAGAAGC TGCCCGAGAT TTCAAACGTG
CACGACGGCG CCGACCGCAA CAGCCCGGTG GACATCATCA TCGAGCTGAA GCAGAACGCC
ATTCCTCAGG TCGTGCTGAA CAAGCTGTTC AAGCACACGC AGCTGCAGGT GGGCTGGGGC
GTCATCATGA TCGCCCTGGT GGACGGCGTG CCCCGCACCC TTTCCCTTCG CGAGATCCTG
CACTACTACA TCTTGCATCA GGAAGACGTT ATCCGCAGGC GCACCCAGTT CGACTTGGAA
AAAGCCGAGG CCCGCGCCCA TATCGTCGAA GGCTTGCTGA TCGCGCTCGA CCACATCGAC
GAGGTCATTG CCATCATCCG CGGCAGCCGC ACCGATAAAG AAGCATCCGA CAAACTGTCC
GAGCGCTTCG GGCTGTCGGA AGCCCAGTGC ACCGCCATCC TGCAGATGCA GCTGCGCCGC
CTGACTGGCT TGGAGCGCGA GAAGCTCCAG GAGGAATTGG CCGAGCTGAA AGAGAAGATC
GCCTACTACA AGCGAATTCT GGCCGACGAG CATCTCATGC GTCAGGTCAT TAAGGAAGAG
CTGCAGGAGA TCAAGGGCCG TTTCAACACG CCGCGCCGCA CCCGCATCGC CGGTCCCGCG
AAGGACATCG ACGTCGAAGA TCTGATCGCC GACGAGGAAA TGGTCGTTAC CATGACCAAC
GCCGGCTACA TCAAGCGTCT GCCCGTGACC ACCTACCGCC AGCAAAAACG CGGCGGCAAG
GGCATGCAGG GCGTGAACCT GAAAGAGAAC GACTTCGTCG AGCATCTCTT TATTGCGTCC
ACCCATAACT ACATGCTGTT CTTCAGTTCG GCAGGCAAGG TGTACCGCAA GAAGGTGTTC
GAAATCCCCG AGGCCGGCCG CCATGCACGC GGTACCGCCG TGGTGAATCT GCTCAAGCTG
GACAAAGGGG AATCCATCGT GGCCGCCATC GCCACCAAGG AGTTCCCCGA GGACGAGTTC
CTGATGTTCG GCACCAAGGA GGGTATGGTC AAAAAGACCG CCATGTCGCT GTATGACCGC
ACCCGTCAGG ACGGCCTGAT TGCCATCAAT CTGCGCGAAG GCGACGAGTT GATTGCCGTC
AAGCGCGTAA AGCCTGGTGA GAAGGTCGCC ATGGTATCCA GCGCCGGCAA GGCCATCTCT
TGGGATGAAA GCGAAGTCCG CGCCATGGGC CGTGACACTA TGGGTGTCCG CGGCATGACC
GTGCCCGACG GCGTGCATGT GCTCGGCCTG GAAATCGCCA GCCCCGGCAA GGAAATCTTC
GTGATTACCG AACGCGGCTA CGGCAAACGT ACCCCCGTTG AGGAGTATCC GCTGCACCAC
CGCGGCGGCC AGGGCGTGTT CACCATCACG ATGACCGCCA AGAAGGGCCA GCTTGCAGCC
ATGAAGGTCG TGACTTCCGA AGATGCGCTC ATGATCATTT CCGAAGAGGG CGTCGTCATG
CGGACGAGCG TTTCCGACAT CAGCCAGCTG GGCCGCGCGA CCCAGGGCGT GAAGGTGATG
AATGTCGACG GCAAGGACCG TGTGTCCGCC GTGGCCATCG CGCCGGACGG CAAACGCAAG
AAGCGTCCCA AGGACAGCGG AGACATGGAA GTCTCCGAAG CCGATCTGGA AGATTAA
|
|---|
| Protein sequence | MSDKEILEAA DSGNTGVQTA ELGREMRTSF LEYSMSVIVS RALPDVRDGL KPVHRRILYA
MYDSGITPNK PHSKSARTVG DVIGKYHPHG DSAVYDAMVR LAQDFNMRVP LVDGHGNFGS
IDGDSAAAMR YTEARLAKPA MELLADLGKE TVDWVPNYDE SLQEPSVLPA RFPNLLVNGS
NGIAVGMATN IPPHNLGEAI DATCLMLDNP DVTTEELMEV MPGPDFPTGG VIRGREGIIS
AYETGRGSLT IQSSYKIKEG KNGKTSIIIT EIPYQVNRSN LMQKIGELVR DKKLPEISNV
HDGADRNSPV DIIIELKQNA IPQVVLNKLF KHTQLQVGWG VIMIALVDGV PRTLSLREIL
HYYILHQEDV IRRRTQFDLE KAEARAHIVE GLLIALDHID EVIAIIRGSR TDKEASDKLS
ERFGLSEAQC TAILQMQLRR LTGLEREKLQ EELAELKEKI AYYKRILADE HLMRQVIKEE
LQEIKGRFNT PRRTRIAGPA KDIDVEDLIA DEEMVVTMTN AGYIKRLPVT TYRQQKRGGK
GMQGVNLKEN DFVEHLFIAS THNYMLFFSS AGKVYRKKVF EIPEAGRHAR GTAVVNLLKL
DKGESIVAAI ATKEFPEDEF LMFGTKEGMV KKTAMSLYDR TRQDGLIAIN LREGDELIAV
KRVKPGEKVA MVSSAGKAIS WDESEVRAMG RDTMGVRGMT VPDGVHVLGL EIASPGKEIF
VITERGYGKR TPVEEYPLHH RGGQGVFTIT MTAKKGQLAA MKVVTSEDAL MIISEEGVVM
RTSVSDISQL GRATQGVKVM NVDGKDRVSA VAIAPDGKRK KRPKDSGDME VSEADLED
|
|---|
| |