Gene Shel_00030 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_00030 
Symbol 
ID8393895 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp2840 
End bp3970 
Gene Length1131 bp 
Protein Length376 aa 
Translation table11 
GC content55% 
IMG OID644984778 
ProductrecF protein 
Protein accessionYP_003142429 
Protein GI257062757 
COG category[L] Replication, recombination and repair 
COG ID[COG1195] Recombinational DNA repair ATPase (RecF pathway) 
TIGRFAM ID[TIGR00611] recF protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000612951 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.32668e-05 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGGACATCC GGATCGAGTC GTTCCAGCTG CGGGACTTTC GCAATTACGA GACGTTCCGT 
CTGGATGGCA TTGGGCCGCT GACTATTTTC ATCGGTCCGA ACGGAATAGG GAAGACAAAC
GTGCTGGAGG CAATCCAGCT GCTGACGGCC ACGCCGTCGT TTCGTCATGC TCACACCCAG
GAGCTGATCA GGTGGGATGC GGAAAATTCT TTGCTGAAGG CCCATATGGT GTCGGATGTT
CGCGACCTGG AAATAGGCCT TGCCATCGGT CCGACCGGGA AAACCTATAG CATCAACGGC
AAGAAACATT CGGGACAGGA CGTTCAGACC ACGCTGCCTT CCGTCGTGTT CTCGCCTGAC
GACATGCTGC TCCTGAAAGG CTCGCAGTCC TATCGCCGCG ACGAGCTGGA TGCGGTGGGA
TGCCAGCTGT CCAAAAACCA CCGCATCCTG AAGCGGGACT ACCTTAAACT GATGAAACAT
AAGAACGCCC TGCTCAAGGA CGGGGTGACG GGACCTTACA TCGAAAGTGT CAACGATCTG
ATCGTGCCGA CGGCCACGCA GCTTTATCTA TATAGAGTTG CGTTGTTTAA AAACATCGCG
GCCCGCATGG CGGAGGTATA TGCAACCATT TCCGCAGGTG GCGAACGTCT TGAGATGCGC
TACATCCCAT CGTGGCATCC GATGGAAGTA TCGAAGGATG TTATCGAGGA CGTCCCATTC
GACCTGGGTA AACAGGAGAT TTCAACCCGT CTTGAAGAGG CGCTGCACCA GCGTGCCGTC
GAAGAGTACG AACGGGGCAG AGGGCTTGTC GGCCCCCATG CGGATAAGAT CATGTTCTAT
CTGAACGGGC GCAACGCGTC TTTGTACGGC TCGCAGGGCC AGCAGCGGTC TATTTCCCTG
GCATGGAAGA TTGCCGAAGT GGGTCTGATT GAAGAGATCC TCGGCCAGAA ACCCGTTCTG
CTGCTGGACG ATGTGGCCAG CGAATTGGAC GCCGCGCGCC GCGGGGCGTT GGTCGAGCTT
CTGCATCGTG ATATCCAAAC CTTCATCACC ACTACGGATA TCGGCACATT CGAAAGCGAA
GTGGTTGACG AAGCCAGCGT GGTGAATATG CTTGAACTCA GGAATAAATA A
 
Protein sequence
MDIRIESFQL RDFRNYETFR LDGIGPLTIF IGPNGIGKTN VLEAIQLLTA TPSFRHAHTQ 
ELIRWDAENS LLKAHMVSDV RDLEIGLAIG PTGKTYSING KKHSGQDVQT TLPSVVFSPD
DMLLLKGSQS YRRDELDAVG CQLSKNHRIL KRDYLKLMKH KNALLKDGVT GPYIESVNDL
IVPTATQLYL YRVALFKNIA ARMAEVYATI SAGGERLEMR YIPSWHPMEV SKDVIEDVPF
DLGKQEISTR LEEALHQRAV EEYERGRGLV GPHADKIMFY LNGRNASLYG SQGQQRSISL
AWKIAEVGLI EEILGQKPVL LLDDVASELD AARRGALVEL LHRDIQTFIT TTDIGTFESE
VVDEASVVNM LELRNK