| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_2178 |
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| Symbol | |
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| ID | 8368639 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Capnocytophaga ochracea DSM 7271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013162 |
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| Strand | + |
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| Start bp | 2594498 |
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| End bp | 2597485 |
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| Gene Length | 2988 bp |
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| Protein Length | 995 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 644984632 |
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| Product | bifunctional preprotein translocase subunit SecD/SecF |
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| Protein accession | YP_003142283 |
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| Protein GI | 256821004 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.900836 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAAACA AAGGACTTGT GAAACTATTT GCCATATTGT TTGGGCTAAT ATGTATTTAT
CAGCTTTCAT TCACCTACGT GGCAGGTAGA GTAGAAGATG AAGCCAAAGC ATTCGCTGAG
GCAAAAGTGC CTAATACTCA AGCTGACTAT ATCGCTAAAC GCGAAGCTAT AGAAGCTAAG
TATTTGGACG ATAAAATGGG GCAAGATGTC TATAACCTCG GTTTTACAAA ATTCACTTAT
GGTGAAGTAA AAGCTAAAGA ATTGAACCGC GGTCTTGACC TTAAAGGCGG TATCAACGTG
ATTCTGCAAA TTTCCGTAAA AGACATCTTG AGAGGTCTTG CTGACAACTC CAAAGACCCT
ATCTTTAACA AATCATTAGC CGAAGCCGAT GAACAGCTCC GCAAAACCGA CAAAACCTAC
TTGGATTTGT TCTTCGAGGC TTACGCTAAG AACGGAGGTA AATTAGCCTC CCCCGATGTG
TTCGCTAATA AAACCCTCAG CGATCAAATC AACTTCCAAA TGAGTGATAG TGAGGTGCGC
CCTATCATCA GAAAGCGCGT AGACGAGTCT ATCGTATCTG CTTTCGAGGT ATTGCGCAAA
CGTATCGATA AATTTGGCGT TTCTCAACCT AATATCCAGC GCCTTGGTAA CTCAGGTCGT
ATCCTTGTAG AACTTCCAGG TGCTAAAGAT ATCACTCGCG TACAATCTCT CTTGCAAAGT
ACCGCTCAGC TTGAGTTCTG GGAAACTTAT AAGAATACTG ATGTTTTCCC TTATTTACAA
GCCCTCAACG AGCAACTTAA ATCTACTGCT AAAACCACTG ATAAAGTAAA AGATACGCTC
ACAGCAGCTA CTCAATCAGG TAGCAGTGCT ATTGATTCTC TACTTACTGA TGTAAAGAAG
GATTCTGTTC CTACTCAACA AGGAAAAGGC AATCCTTTGT TTGACCTTAT CAAAGCTAAT
TCTTATGAAG GTTCTCCAGT ACTTTTTACA GTAAGTTTAA AAGATACTGC TCAAGTAAAT
AGCTATATCA ATTCTCCTGA AGCAAAACAT TTGATTCCTG CTTCATTGCA GTATGTAAAA
TTCGCTTGGG GTAAACCTGA TAAAAAGACC TCCCTTATCG AACTTTATGC CCTAAAAGGT
AACCGCGATA ACACCCCTCC TCTTACAGGT AACGTAGTAA CCCAAGCCGA ACAAACTTAC
GACGTTCGCA ACCAGCCTGC CGTATCTATG CAAATGGACG GTAAAGGAGC ACGCATTTGG
GAAGCGCTTA CTGGTAAAGC ATTTACTCAA AATACCAATA TTGCTATCGT ACTCGATAAC
ATCGTATATT CAGCACCAGG AGTAACTACA GGTGCTATTT CAGGAGGTCG CTCTGAAATT
ACAGGGCATT TTACTTTAAA TGAAGCTGTC GACCTTGCTA ACGTGCTCCG TGCTGGTAAA
TTACCTGCAA GTGCTGATAT CGTACAATCT GAAATCGTAG GACCTTCTTT GGGACAAGAA
GCTATCGATA GCGGTATGAA CTCTTTCCTT ATCGCTACTA TCTTCATCTT TGCGTGGATG
ATATTCTACT ACGGTCGTGC GGGTATTTAT GCCGACCTCG CTTTGGTATT CAATATACTC
CTCATATTTG GAGTGTTAGC AAGTATAGAA GCTGTTCTTA CGCTCCCTGG TATTGCGGGT
ATCGTGCTTA CCATTGGTAT GGCAGTCGAC TCGAACGTGC TGATATTCGA GCGGTCGAAA
GAAGAACTGC GCAAAGGTAA AAACATCAAT CAAGCAGTGG TTGATGGTTT CAAACACGCC
CTATCGTCTA TCTTAGACTC CAACATTACT ACAGCGCTTA CTGCTCTTAT CTTGTTGTTC
TTTGGTAGTG GTCCTATCCA AGGTTTTGCA ACTACCTTGC TTATTGGTAT TGCAACTACT
TTGTTCACCG CTATCTTTAT CACTCGCTTG TTTATCGACT ATAGTGTTGA GAAAAAACAC
ACGCTTACTT TCACCACTCC TATTACTAAG AACTGGTTCA AAAATGTAGA TCTCAACTTC
ATCGGCAAGC GCAAAATAGG ATATGCTTTT TCTATTATCC TATCAATAAT AGGTATCATT
TCTCTCTCTA CTCGTGGTCT CGACCAAGGT ATCGATTTCG TAGGTGGTAG AACTTACCAA
ATTCGTTTTG AGCACGAAGT AAACCCTACC CAAGTAGCCG ATGCCCTCAA AACTACTTTA
GGAAATGTGG AAGTGAAGAC TTTTGGAGCT CCTAACCAAG TGAAAATCGC TACTAAGTAT
AAAGTACAAG AAGAAAGCAC TGAGGTAGAT AATGAAATAC AAGAGCTCTT GTACAAAGGA
TTACAGAAAT TCTTACCCGA AGGAACTTCA TTCGATAGTT TCGCTAAAGC CTCTTCTACT
GATAAGATTG GTATTATGCA ATCTATGAAA GTAGGGCCTA CTATCGCTGA AGATATTAAG
AGCAGTGCGT TCTGGTCAGT TATCGGTTCG CTTATTGTAA TCGGTCTATA TATCTTATTT
CGTTTCCGAA GATGGCAGTT CTCTATGGGT GCGATTGTAT CTTCAGCGCA CGACGTGCTA
ATGGTACTCG GTATCTACTC GCTCACTTAT AGCATTATGC CTTTCAATAT GGAAATCGAC
CAAGCTTTTA TCGCGGCTAT TCTTACAGTA GTAGGTTACT CACTAAACGA CACGGTGATT
ATCTACGACC GTATCAGGGA AGTAATGCGT GAACCTCATT GGTCAAGAGA GAAAATCAAT
CACGCGCTCA ACGCTACCCT TAGCCGTACC TTGAACACCT CATTCACTAC TTTGGCAGTA
CTCGTTACTA TCTTTATCTT TGGTGGTGAA ACCTTGCGTG GCTTTATGTT CGCAATGATT
ATCGGGGTAC TCATCGGTAC TTACTCTTCT ATCTTCGTGG CAGCTCCTCT CATTTACGAT
ACTGTAAAGG ACGAAGCTGA CCATACTAAA GAACAATCTA AAAAGTAA
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| Protein sequence | MQNKGLVKLF AILFGLICIY QLSFTYVAGR VEDEAKAFAE AKVPNTQADY IAKREAIEAK
YLDDKMGQDV YNLGFTKFTY GEVKAKELNR GLDLKGGINV ILQISVKDIL RGLADNSKDP
IFNKSLAEAD EQLRKTDKTY LDLFFEAYAK NGGKLASPDV FANKTLSDQI NFQMSDSEVR
PIIRKRVDES IVSAFEVLRK RIDKFGVSQP NIQRLGNSGR ILVELPGAKD ITRVQSLLQS
TAQLEFWETY KNTDVFPYLQ ALNEQLKSTA KTTDKVKDTL TAATQSGSSA IDSLLTDVKK
DSVPTQQGKG NPLFDLIKAN SYEGSPVLFT VSLKDTAQVN SYINSPEAKH LIPASLQYVK
FAWGKPDKKT SLIELYALKG NRDNTPPLTG NVVTQAEQTY DVRNQPAVSM QMDGKGARIW
EALTGKAFTQ NTNIAIVLDN IVYSAPGVTT GAISGGRSEI TGHFTLNEAV DLANVLRAGK
LPASADIVQS EIVGPSLGQE AIDSGMNSFL IATIFIFAWM IFYYGRAGIY ADLALVFNIL
LIFGVLASIE AVLTLPGIAG IVLTIGMAVD SNVLIFERSK EELRKGKNIN QAVVDGFKHA
LSSILDSNIT TALTALILLF FGSGPIQGFA TTLLIGIATT LFTAIFITRL FIDYSVEKKH
TLTFTTPITK NWFKNVDLNF IGKRKIGYAF SIILSIIGII SLSTRGLDQG IDFVGGRTYQ
IRFEHEVNPT QVADALKTTL GNVEVKTFGA PNQVKIATKY KVQEESTEVD NEIQELLYKG
LQKFLPEGTS FDSFAKASST DKIGIMQSMK VGPTIAEDIK SSAFWSVIGS LIVIGLYILF
RFRRWQFSMG AIVSSAHDVL MVLGIYSLTY SIMPFNMEID QAFIAAILTV VGYSLNDTVI
IYDRIREVMR EPHWSREKIN HALNATLSRT LNTSFTTLAV LVTIFIFGGE TLRGFMFAMI
IGVLIGTYSS IFVAAPLIYD TVKDEADHTK EQSKK
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