Gene Coch_2160 details

Gene Information

• Locus tag: Coch_2160
• ID: 8368621
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Capnocytophaga ochracea DSM 7271
• Kingdom: Bacteria
• Replicon accession: NC_013162
• Strand: +
• Start bp: 2576992
• End bp: 2579064
• Gene Length: 2073 bp
• Protein Length: 690 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 644984614
• Product: Alpha-L-fucosidase
• Protein accession: YP_003142265
• Protein GI: 256820986
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG3669] Alpha-L-fucosidase

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAAT TAATCTTATT AGTCACCGCT TTATTTATGG TGGCTTGCAA AAGTATTGAA 
GCCCCCAAGT CAGTGGGAGC TATTCCTTCC GCACGTCAGT TGCCGTGGCA CGAGATGGAA 
TATTATGCTT TTATCCACTT TAATATGAAC ACCTTTACCG ATATGGAATG GGGCACAGGT 
GGCGAAGACC CTGTTTTATT CAACCCTACC GAATTAGATG TAAATCAGTG GGTGAAAGTG 
ATTAAAGACG CTGGTATGAA AGGTGTTATT ATCACGGCTA AGCACCACGA TGGTTTCTGC 
TTATGGCCAT CAAAGTACAC CGAGCATTCT GTAAAAAACT CACCTTGGAA AAACGGCAAA 
GGCGATGTTA TAAAAGAGCT TTCAGAAGCC TGCCACAAAG CAGGACTTAA ATTTGGAGTA 
TATTTATCAC CTTGGGATAG AAACCACGCT GAGTATGGTA GAGAAGCCTA CGTTACCTAT 
TTCCATAACC AACTACGAGA ATTACTTACC AATTACGGTG AAATATTTGA AGTATGGTTT 
GACGGTGCCA ACGGTGGTTC AGGTTATTAC GGTGGAGCTA ACGAAACTCG TACTATTGAT 
GCTCATACTT ATTATCAGTG GGATAAAACA TTTGCCATAG TACGCGAATT GCAGCCTAAT 
GCTACTATCT TTGGTGATGA AGGTCCGGAT ATTCGCTGGA TAGGTAATGA AAAAGGCTTT 
GGTACTCGTA CTAACTGGAA TCCTTTTACC TCTAACCCTT CTCTACAAGG AAAAGACCAC 
TTACATCATT TGGGTGAAGG TGATGAAAAT GGCGTAAATT GGATTCCTGC CGAAGCTGAT 
GTATCTATTC GCCCAGGTTG GTATTACCAC GCACGAGAAG ACCACCAAGT GCGTCCATTA 
GAAAAAATGG TAGACATATA CTACGCTTCA GTAGGTCGCG GTTACAACTT ATTACTGAAT 
CTTCCCGTGG ATAGACGTGG CTTAGTACAC GAAAATGACA TCAAGAGACT TATGGAACTC 
AAAAAAGTTA TAGAAGCAGA TTTTGCACGT AACCTCGTAA CTGATGCCTC TGTAACGGCT 
TCTAATATTC GTAAAAATAA CAAGCAATTT AAAGCTGAAA AAACTACCGA TAGTGATAAA 
AATACCTATT GGACAACCGA CGAAGGAGTA ACAGAAGCTT CTATAGAACT AAACTTTACC 
AAGCCTACTA CCTTCAACCG TTTTATGGCA CAAGAGTATA TCCCATTGGG GCAACGTGTA 
AAGAAGTTTA AATTAGAATA CCAAAAAGAT GGCAAATGGG AAACTATAGA TGAACAAACA 
ACTATTGGCT ACAAGCGATT ACTACGCTTC CCATCAGTAA CAGCTACTAA GGTACGTTTC 
ACAGTTTTAG AAGCTAAAGG TTCGCCATTG ATTAGCAATA TAGGGTTATA CAATGCACCT 
GTGTTATTGG TAACTCCTCA GCTTTCTCGT GATAAGAATG GTCTAGTAAC CCTCACTCCC 
GCTGATACTG AAACTGAAAT TTATTATACT TTAGACGGCA GTCAGCCTAC TGAACAGTCG 
TTGCGTTATA CAGCTCCTTT CCCCGTTACT CAGCCTACTT CTTTAAAATT TGTAGCCTAT 
GACCGCAAGC AGCAATTGTA CAGTGAAGTA GCTTCTTACG CATTGGATAT CCCCAAAGCA 
AAGTGGAAAG TGTTATCTTC TGCTTCCTCT GATATCCAGA AAGTAATTGA TGAGAAACCT 
AATACGTGGT TTGCTCAAGA AAAGGGCAAT ACACCGACTG CCATTACTAT TGATTTAGGA 
GAGCTGTTAA ACCTAAAAGG ATTTACCTAT TTGCCTTCAC AAGACCGCTG GGCTGAAGGC 
ACTATCAGTC ATTACATTTT TGAAGTGAGC GCTGATAATG TTCATTGGAA GAAGCTAAGT 
GAGGGAGAAT TTGGCAATAT CAAGAACAAT CCTATTGAAC AACGCATTAC CTTCCCTGCC 
GAGAAAGCCC GTTATATCAA GCTTACCGCT ACCAAAACTG TAGATGATAC CAATAGAGTA 
TCGTATGCCG AAATAGGAAT CATTACACAA TAA 

 

Protein sequence

MKKLILLVTA LFMVACKSIE APKSVGAIPS ARQLPWHEME YYAFIHFNMN TFTDMEWGTG 
GEDPVLFNPT ELDVNQWVKV IKDAGMKGVI ITAKHHDGFC LWPSKYTEHS VKNSPWKNGK 
GDVIKELSEA CHKAGLKFGV YLSPWDRNHA EYGREAYVTY FHNQLRELLT NYGEIFEVWF 
DGANGGSGYY GGANETRTID AHTYYQWDKT FAIVRELQPN ATIFGDEGPD IRWIGNEKGF 
GTRTNWNPFT SNPSLQGKDH LHHLGEGDEN GVNWIPAEAD VSIRPGWYYH AREDHQVRPL 
EKMVDIYYAS VGRGYNLLLN LPVDRRGLVH ENDIKRLMEL KKVIEADFAR NLVTDASVTA 
SNIRKNNKQF KAEKTTDSDK NTYWTTDEGV TEASIELNFT KPTTFNRFMA QEYIPLGQRV 
KKFKLEYQKD GKWETIDEQT TIGYKRLLRF PSVTATKVRF TVLEAKGSPL ISNIGLYNAP 
VLLVTPQLSR DKNGLVTLTP ADTETEIYYT LDGSQPTEQS LRYTAPFPVT QPTSLKFVAY 
DRKQQLYSEV ASYALDIPKA KWKVLSSASS DIQKVIDEKP NTWFAQEKGN TPTAITIDLG 
ELLNLKGFTY LPSQDRWAEG TISHYIFEVS ADNVHWKKLS EGEFGNIKNN PIEQRITFPA 
EKARYIKLTA TKTVDDTNRV SYAEIGIITQ