Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_2157 |
Symbol | |
ID | 8368618 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | + |
Start bp | 2573466 |
End bp | 2574881 |
Gene Length | 1416 bp |
Protein Length | 471 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 644984611 |
Product | RNA methyltransferase, TrmA family |
Protein accession | YP_003142262 |
Protein GI | 256820983 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.615925 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCAAAA ATAAGCATAT AACCATTGAA AATGTAACCG TGATTGATGC AGGAGCCAAA GGCAAAAGCA TTGCTAAAGC CCCTGACGGA CGTGTGATAT TTATAAGTAA CGCTATTCCT GGTGATGTAG TAGATGTGCA GACCACCAAG AAGAAATCGG CTTATTATGA AGGTTTTGTA ACTAAATATC ACCAACTATC AGAACAACGA GTAACGCCCG TATGTTCTCA CTTTGGCTAT TGTGGCGGTT GCAAATGGCA AGATATGAAC TACCAAAGTC AGCTATTTTA CAAGCAGAAA GAAGTAGAAA ACAACTTAGT ACGGTTAGGT AGGATAGAAA TTCCTGCTGT GATGCCTATC ATAGGCTCTG ACGAGACTTA TTACTACCGC AACAAAATGG AGTTTTCTTT TTCGGATATG CGCTGGCTTA CTCCCGATGA AATTAAGAAA GCCGACGAAA TAGACAATCG GAATGCCTTA GGTTTTCACA TAGCAGGAGC TTGGGACAAG ATTTTGGACA TAGACAAATG TTACTTGCAA GCCGACCCTT CTAACGCGAT ACGCTTGGAG GTAAAGCGTT TTGCCTTGGC GAACGAAATG CCTTTTTACA GTCCGAGACA ACAAACAGGC TTATTGCGTA CTATGATGAT ACGCATTAGC TCCATTGGGC AAATAATGGT AGTGATACAG TTCTTCCGCA ACGACCCTAA AATTACACTG CTCCTTGACC ATATTGCAGA GACATTCCCG ATGATTACCT CTTTGCAATA CTGTATCAAT AGCAAAGGCA ACGATGCTAT TTATGACCAA GAACTTATTT GCTATAAAGG TACTGACTGT ATTTATGAGG AAATGGAAGG GTTGCGATTT AAAATCAATG CCAAGTCGTT TTACCAAACT AACTCGGCAC AAGCGTACAA GCTGTACCAA GTAGCTCGTA ACTTTGCCGA TTTAAAGGGC GATGAATTAG TGTACGACCT TTATACAGGG ACGGGCACTA TTGCGCAATT TGTAGCCAAA AAAGCGAAAA AAGTGATAGG GGTAGAAGCT GTACCAGAGG CTATAGCAGA TGCCAAAGAC AATGCTTTTG CCAATGGTAT TGAGAATGTT ACTTTTTACG TGGGAGATAT GAAAAACATT TTCAACGACA CTTTTATAGA AGAAAACGGC ACCCCTGATG TGATTATCAC CGACCCTCCT CGCGACGGTA TGCACAAAGA TGTAGTAGCT AAAATTCTTC AAATAGCCCC CAAAAAGATA GTATATGTAA GTTGCAATAG TGCAACGCAA GCGCGAGACC TTTCCTTGCT TGATGTAACT TATAAAGTAA CCAAAGTTCA GCCCGTGGAT ATGTTTCCAC AAACCTACCA CGTAGAGAAT GTTGTATTAT TAGAGAAGAG AAATGAAAAA AGCTGA
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Protein sequence | MSKNKHITIE NVTVIDAGAK GKSIAKAPDG RVIFISNAIP GDVVDVQTTK KKSAYYEGFV TKYHQLSEQR VTPVCSHFGY CGGCKWQDMN YQSQLFYKQK EVENNLVRLG RIEIPAVMPI IGSDETYYYR NKMEFSFSDM RWLTPDEIKK ADEIDNRNAL GFHIAGAWDK ILDIDKCYLQ ADPSNAIRLE VKRFALANEM PFYSPRQQTG LLRTMMIRIS SIGQIMVVIQ FFRNDPKITL LLDHIAETFP MITSLQYCIN SKGNDAIYDQ ELICYKGTDC IYEEMEGLRF KINAKSFYQT NSAQAYKLYQ VARNFADLKG DELVYDLYTG TGTIAQFVAK KAKKVIGVEA VPEAIADAKD NAFANGIENV TFYVGDMKNI FNDTFIEENG TPDVIITDPP RDGMHKDVVA KILQIAPKKI VYVSCNSATQ ARDLSLLDVT YKVTKVQPVD MFPQTYHVEN VVLLEKRNEK S
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