Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_2085 |
Symbol | |
ID | 8368546 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | + |
Start bp | 2499951 |
End bp | 2500685 |
Gene Length | 735 bp |
Protein Length | 244 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 644984539 |
Product | Shikimate dehydrogenase substrate binding domain protein |
Protein accession | YP_003142190 |
Protein GI | 256820911 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.434063 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAATTT TTGCTCTTGT GGGTCGTAAT ATTGGCTATT CTTTTTCTCG AAAATATTTC ACTGAGAAAT TTAAACGAGA AGGTATTAAT GATTGTGAAT ATATCAATTT TGATATACAA AATCTCAATG AATTACCCGC TCTCTTAAAA AACACTCCTA ACTTACGAGG AATGAATGTT ACCATTCCGT ATAAGCGAGA AATAATGAAG CTACTTACTA CCGTTGATGC TACTGCACAA GCCATTGGAG CTGTGAATAC TATAAAAGTT ACCCCTGATG GACTTGTCGG TTATAATACC GACTACTATG GCTTTAGCAA ATCATTATCT CCTTTATTGC AACCACATCA TACTCACGCT CTTATCTTAG GTACGGGAGG TGCATCGAGT GCTGTTGCTT ATGCGCTCAA GCAACTAAAT ATTGATTATC GTTTTGTATC CCGCACACCA CAGATGAATC AGTTTACTTA CGCAGAACTT ACCAAAGAGA TTATAGAAAA TTATCACCTT ATTATTAACA GTACTCCCTT AGGTACATTT CCTAATATTA ACGACTGTCC TCCTATTCCT TATGAATATC TCACTCCTGA GCACTTGCTT TATGACCTTA TTTATAATCC TTCACAAACT ACATTTCTAC ACAGAGGGGA AAAGCAGGGA GCTACTACTT GTAATGGGCA ACTAATGTTA GAACTTCAAG CTGAAAAAGC GTGGGAAATA TGGAATAAAG AATAA
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Protein sequence | MTIFALVGRN IGYSFSRKYF TEKFKREGIN DCEYINFDIQ NLNELPALLK NTPNLRGMNV TIPYKREIMK LLTTVDATAQ AIGAVNTIKV TPDGLVGYNT DYYGFSKSLS PLLQPHHTHA LILGTGGASS AVAYALKQLN IDYRFVSRTP QMNQFTYAEL TKEIIENYHL IINSTPLGTF PNINDCPPIP YEYLTPEHLL YDLIYNPSQT TFLHRGEKQG ATTCNGQLML ELQAEKAWEI WNKE
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