Gene Coch_2043 details

Gene Information

• Locus tag: Coch_2043
• ID: 8368504
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Capnocytophaga ochracea DSM 7271
• Kingdom: Bacteria
• Replicon accession: NC_013162
• Strand: +
• Start bp: 2448217
• End bp: 2448735
• Gene Length: 519 bp
• Protein Length: 172 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 644984497
• Product: isopentenyl-diphosphate delta-isomerase, type 1
• Protein accession: YP_003142148
• Protein GI: 256820869
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG1443] Isopentenyldiphosphate isomerase
• TIGRFAM ID: [TIGR02150] isopentenyl-diphosphate delta-isomerase, type 1

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 0.82849
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAAGAAC AAGTAATATT AGTGAACGAA CACGATACTC CCATAGGCTT AATGGGGAAG 
CTTGAAGCAC ACCAAAAAGC CTTATTACAT AGGGCTTTCT CGGTATTTAT ACTCAACGAT 
AAAGGGGAGA TTATGTTACA ACAAAGAGCT GCGAGCAAAT ATCATTCGCC TAACTTGTGG 
ACGAATACTT GTTGCAGTCA CCCACGTCAG GGCGAGACAA CTATTGAAGC AGGCAGGCGT 
CGCTTACAAG AAGAAATGGG CTTTGTTACA GAACTTACCG ATATATTGAG TTTTATCTAC 
AAAGCTCCTT TTGATAACGG GCTTACAGAG CACGAACTCG ACCATATTCT CATAGGATAC 
TATAACGCCT CCCCTACTAT CAACCCTGAA GAAGTAGCCG ATTGGCGTTG GGAACTTCCA 
GAAAAGATAA AGGAAGATAT TGCTAAGCAC CCGCATCGGT ATACCGAATG GTTTAAGATT 
ATTTTCGATA AATTTTTACA TCAAGTACTA AAAGGATAA 

 

Protein sequence

MEEQVILVNE HDTPIGLMGK LEAHQKALLH RAFSVFILND KGEIMLQQRA ASKYHSPNLW 
TNTCCSHPRQ GETTIEAGRR RLQEEMGFVT ELTDILSFIY KAPFDNGLTE HELDHILIGY 
YNASPTINPE EVADWRWELP EKIKEDIAKH PHRYTEWFKI IFDKFLHQVL KG