Gene Coch_1829 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_1829 
Symbol 
ID8368277 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand+ 
Start bp2185654 
End bp2186655 
Gene Length1002 bp 
Protein Length333 aa 
Translation table11 
GC content43% 
IMG OID644984271 
ProductPyridoxal-5'-phosphate-dependent protein beta subunit 
Protein accessionYP_003141935 
Protein GI256820656 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0031] Cysteine synthase 
TIGRFAM ID[TIGR01137] cystathionine beta-synthase 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0936757 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAATAG ATGAATCATT GAACGTACAT AGCAGCTTAC TACAACTCAT TGGTAATACG 
CCCCTTTTGG AATTGCACAA AATTACCAAA GGTCTCAAAG GGCGTTATTT TGCAAAGCTT 
GAGGCTTTCA ATGTGGGTCA TTCTGCTAAG GATAGGGTGG CTAAGTACAT TGTAGAAGAT 
GCCGAACGTA AGGGATTACT TAAACCAGGT AGTACCATCG TAGAAACTAG CTCTGGCAAC 
ACGGGCTACA GTTTAGCAAT GATAAGTGCC CTAAGAGGCT ACCGCTGTAT CATTGCTATT 
AGCGATAAAT CGTCTCACGA CAAAGTAGAA ATGCTCCAAG CCTTAGGAGC AGAGGTGCAT 
TTGTGCCCTG CAAATGTTGC TCCCGATGAC CCTCGCTCTT ACTACGAAGT AGCAAAACGT 
ATCCATAACG AAACTCCTAA TTCTATCTAT GTCAATCAGT ATTTCAATCC ACTAAATCCA 
GAATCTCATT ACCAGACAGG GCGTGAGATA TGGGAACAAA CACAAGGCGA GATTACTCAC 
GTGGTGGTAT GTAGTGGAAC AGGCGGTACC ATTTCAGGTA TTGCTCACTA CCTAAAAGAG 
CAAAACCCAA GAGTGCAAGT ACTGGGGGTA GATGCCTATG GTTCGGCTAT CAAAAAATAT 
CACGAAACCC GAGAGTTTGA CCCTGCCGAA GTATATCCAT ACAAAATAGA AGGAATAGGT 
AAAAACTTGA TTCCTACTGC TACTGATTTC GATGTCATTG ATGAGTTCAT CAAAGTAACC 
GATAAAGATG CAGCACTTAT GGCTCGCAAA TTAGCACGTA CCGAGGGGCT CTTTATGGGC 
TACACTAGTG GGGCTGCAAT ACAAGCGGTA AAACAATATG CTGAGGCAGG TAAATTCGAC 
GAAAATAGCA TCGTAGTAGT CCTCTTCGCC GACCACGGTT CGCGCTATAT GAACAAAATC 
TATAGCGACG ATTGGATGAA AAAACAAGGA TTTATTGACT AA
 
Protein sequence
MKIDESLNVH SSLLQLIGNT PLLELHKITK GLKGRYFAKL EAFNVGHSAK DRVAKYIVED 
AERKGLLKPG STIVETSSGN TGYSLAMISA LRGYRCIIAI SDKSSHDKVE MLQALGAEVH 
LCPANVAPDD PRSYYEVAKR IHNETPNSIY VNQYFNPLNP ESHYQTGREI WEQTQGEITH 
VVVCSGTGGT ISGIAHYLKE QNPRVQVLGV DAYGSAIKKY HETREFDPAE VYPYKIEGIG 
KNLIPTATDF DVIDEFIKVT DKDAALMARK LARTEGLFMG YTSGAAIQAV KQYAEAGKFD 
ENSIVVVLFA DHGSRYMNKI YSDDWMKKQG FID