Gene Coch_1755 details

Gene Information

• Locus tag: Coch_1755
• Symbol: lpxD
• ID: 8368201
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Capnocytophaga ochracea DSM 7271
• Kingdom: Bacteria
• Replicon accession: NC_013162
• Strand: +
• Start bp: 2092395
• End bp: 2093414
• Gene Length: 1020 bp
• Protein Length: 339 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 644984195
• Product: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
• Protein accession: YP_003141861
• Protein GI: 256820582
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1044] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
• TIGRFAM ID: [TIGR01853] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0113516
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAATTTA CAGCATTACA AATAGCCAAT GTACTCGGCG GTGAAGTAGA AGGAAATCCC 
CAAATTGAAG TCTATAAACT TTCAAAAATT GAAGAGGGAA GTGAAGGGAG TATATCTTTT 
TTGGCAAACC CTAAATACAA ACATTTTATC TATACTACTC AAGCATCTAT AGTGATTGTA 
AATAAGGACT TTGAGGCTGA AGATAAAATA TCAGCAACCT TAGTGAGAGT AGACGATGCT 
TATGCCGCTT TTACTAAACT CTTAGAATTT TACAATCAAG TGAAAATGAA TAAAGTAGGT 
ATAGAACAAC CTTCGTTTAT CGCTTCATCT GCTAAAATAG GACAAAATGT ATATATAGGA 
GCTTTTGTGT ATATTGGCGA AAATGTAGTG ATAAGCGATA ATGTGAAAAT CTATCCTAAC 
ACTTACATAG GTGATAACTC ATCAGTAGGT GAGGGGACTA CTATTTTTGC AGGCTGTAAA 
ATATATTCCG AAACTGTCAT AGGTAAAGAT TGTATGCTCC ACAGTGGAGT AGTATTAGGG 
GCTGACGGAT TTGGGTTCCA GCCTAATGAA AAAGGAGAGT TCAGCAGAGT ACCACAGATA 
GGTAATGTCG TGATTGAAGA TTCTGTAGAT ATAGGTGCAG AAACAGCTAT AGATCGTGCA 
ACTTTAGGTT CTACTATCAT TCATAAGGGA GTAAAGTTAG ACAACCAAAT ACATATTGCC 
CACAATGTAG AAATAGGTAA AAATACAGTG ATTGCTGCCC AAACAGGTAT TGCTGGCTCA 
ACTAAAGTAG GCGAAAATTG TATGATAGGG GGTCAAGTGG GAATCGTAGG TCACTTAGTA 
ATAGGCAATC GCGTGAAAAT ACAAGCCCAA ACAGGGGTAG GTCGTAATCT TAAAGACGAC 
GAAGCGATAC AAGGCTCTCC CGCTTTGGGG CACGCCGAAT ACAACAAAGC TTATGTCATT 
TTTAGAAAAT TACCTAACTT GCTTAAACGC TTAGAAGAAT TAGAAAAAAA ATTAAAATAA 

 

Protein sequence

MKFTALQIAN VLGGEVEGNP QIEVYKLSKI EEGSEGSISF LANPKYKHFI YTTQASIVIV 
NKDFEAEDKI SATLVRVDDA YAAFTKLLEF YNQVKMNKVG IEQPSFIASS AKIGQNVYIG 
AFVYIGENVV ISDNVKIYPN TYIGDNSSVG EGTTIFAGCK IYSETVIGKD CMLHSGVVLG 
ADGFGFQPNE KGEFSRVPQI GNVVIEDSVD IGAETAIDRA TLGSTIIHKG VKLDNQIHIA 
HNVEIGKNTV IAAQTGIAGS TKVGENCMIG GQVGIVGHLV IGNRVKIQAQ TGVGRNLKDD 
EAIQGSPALG HAEYNKAYVI FRKLPNLLKR LEELEKKLK